Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01013 ATGGCTTCAAGCTGGGATGCAAGTAATGATCCTGGCAGCCAGTCAGATGAGAGCTATCATTTTGAGAGGTTTCACATTGAGCCTATTTATGATTCCTTCGTATGTCCTCTAACAAAGCAAGTTATGCGCGACCCTGTTACGTTAGAAAATGGGCAGACTTTCGAACGTGAAGCAATTGAAAAGTGGTTCAAGGAATGCAAGGAGAGTGGACGCAAACCCGTTTGCCCTTTgacattaaaagaattaagaagCACCGAACTGAATCCCAGTATAGCGTTGCGTAACACCATTGAAGAGTGGACTGCCAGGAATGAAGCTGCACAGCTGGACATGGCTCAGCGATCATTAAATATAGGGAGTCCGGAAAATGAAACTCTGCAGGCTTTACGGTACGTCCAACACATCTGCCAAAGAGGTCAGTCCAACAAGCGTGTTGTTCGTAATGCTGGTCTTATACCTATGATTGTTGACATGTTGAAGAGCAGCAGCCGAAAGGTTCGTTCTAGAGCTTTGGAAACCCTTAGAACTGTGGTGGAGGAAGATGATGAGAATAAGGAAATTTTGGCTGAGGGGGATATTGTGCGCACTATAGTGAAGTTCCTTTCCCATGAACTTTctaaagaaagagaggaagcTGTCTCTTTGCTTTATGAACTCTCAAAATCTGAAACCCTGTGTGAGAAGATTGGTTCAATCAATGGAGCTATTCTTATATTAGTTGGAATGACAAGCAGCAAATCGGAAGACCTCTCCACTGTTGAAAAGGCTGACAAAACACTGGAGAATCTGGAGAAGTGTGAGAATAATGTACGGCAGATGGCTGAAAATGGTAGACTGCAGGCTCTTCTGAACCAGCTTCTTGAAGGTCCACCAGAAATCAAACTGTCCATGGCTGGATACCTAGGTGAGCTGGCTTTGAACAATGATGTAAAAGTCCTTGTTGCTAGAACTGTCGGTTCATCTCTGATCGATATCATGAAAAGTGGTAATTTGCAGTCAAGAGAAGCTGCTCTGAAAGCTCTAAATCAGATATCATCATGTGAATCTAGTGCTAAGGTTTTGATAGAGGCTGGAATACTTTCCCCGCTTGTCAAGGACCTTTTTGCAGTGGGTCCTAATCCCCTTCCCATGAGACTGAAAGAGGTCTCTGCCACAATCCTTGCCAATCTTGTCTACTCAGGAGTTGACTTTGATTCCATTCCAGTTGGACCTGATCACCAAACTCTGGTTTCAGAGGACATAGTTCATAATTTACTCCATCTCATTAGCAACACTGGTCCAGCTATTGAGTGCAAACTTCTCCAAGTTCTTGTTGGACTTACAAGTTCTCAAACTACTGTTCCAAGTGTTGTTGCTGCTATCAAAAGCTCTGGTGCCACTATCAGTCTGGTTCAATTCATTGAGGCTCCACAGAAAGATCTGCGCGTAGCTTCCATAAAACTTCTTCAGAATCTGTCCCCACACATGGATCAGGAACTAGCAGATGCACTGCGCGGTTCAGTTGGACAGCTTGGTAGTCTAATTAAAGTCATATCTGAAAGTGTAGGAATCACTGAAGAACAAGCAGCAGCTGTTGGCCTTCTAGCTGATCTACCTGAGAGGGATTTGGGCCTCACAAGACAGATGCTAGATGAAGGTGCCTTTCAGCTGGTCATCTCCAGAGTTATTAGTATCAGGCAGGGGGAGATCAGAGGCAACCGCTTTGTGACACCATTTCATGAAGGGCTAGTGAAAATTCTTGCAAGAGTTACCTATGCCTTGACTGATGAACCTGGTGCCATTGCATTCTGTCGTGAGAACAGTCTTGCTGCACTCTTTATCGAATTGCTTCAGTCCAATGGACTGGATAATATACAGATGGTTTCTGCGAGAGCTTTGGAGAATTTATCacaagaatctaaaaatttaacaacatTGCCTGAGGTGTCATCGCCGGGTCTTTGCGCTTCAATTTTCCCGTGCTTGAGTAAACAACCTGTTATAACAGGGTTATGTAAGGTCCATCGAGGAATATGTTCATTAAGAGAAACGTTTTGCCTCTTGGAAGGGCAGGCAGTGAGTAAGTTGGTAGCGCTACTAGACCATGCAAATGTGAATGTGGTTGAGGCAGCACTTGCAGCCTTATGTACTGTGTTAGATGATGGAGTCGATATTGGGCAGGGGGTAATGGTGTTGTGTGACGCAGAGGGAATCAAGCCTATACTTGACGTGTTACTTGAGAAACGGTCAGACAATCTGAGAAGAAGAGCAGTTTGGGCAGTTGAGAGACTATTGCGCACTGAGGATATAGCCTATGAAGTTTCCGGAGATCAAAATGTGAGCACTGCACTCGTCGACGCCTTCCAGCATGGCGACTATCGAACTCGCCAGATTGCCGAGCGTGCTCTCAAGCACGTTGATAAGATACCAAACTTTTCAGGCATCTTTCCCAACATGGGATA 2441 0.4392 MASSWDASNDPGSQSDESYHFERFHIEPIYDSFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECKESGRKPVCPLTLKELRSTELNPSIALRNTIEEWTARNEAAQLDMAQRSLNIGSPENETLQALRYVQHICQRGQSNKRVVRNAGLIPMIVDMLKSSSRKVRSRALETLRTVVEEDDENKEILAEGDIVRTIVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGAILILVGMTSSKSEDLSTVEKADKTLENLEKCENNVRQMAENGRLQALLNQLLEGPPEIKLSMAGYLGELALNNDVKVLVARTVGSSLIDIMKSGNLQSREAALKALNQISSCESSAKVLIEAGILSPLVKDLFAVGPNPLPMRLKEVSATILANLVYSGVDFDSIPVGPDHQTLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTSSQTTVPSVVAAIKSSGATISLVQFIEAPQKDLRVASIKLLQNLSPHMDQELADALRGSVGQLGSLIKVISESVGITEEQAAAVGLLADLPERDLGLTRQMLDEGAFQLVISRVISIRQGEIRGNRFVTPFHEGLVKILARVTYALTDEPGAIAFCRENSLAALFIELLQSNGLDNIQMVSARALENLSQESKNLTTLPEVSSPGLCASIFPCLSKQPVITGLCKVHRGICSLRETFCLLEGQAVSKLVALLDHANVNVVEAALAALCTVLDDGVDIGQGVMVLCDAEGIKPILDVLLEKRSDNLRRRAVWAVERLLRTEDIAYEVSGDQNVSTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMG 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01013 813 ProSiteProfiles U-box domain profile. 28 107 IPR003613 GO:0004842|GO:0016567
Bva10g01013 813 Gene3D - 574 803 IPR011989 -
Bva10g01013 813 Gene3D - 235 319 IPR011989 -
Bva10g01013 813 Gene3D - 320 487 IPR011989 -
Bva10g01013 813 SUPERFAMILY ARM repeat 458 801 IPR016024 -
Bva10g01013 813 SMART arm_5 307 346 IPR000225 GO:0005515
Bva10g01013 813 SMART arm_5 266 306 IPR000225 GO:0005515
Bva10g01013 813 SMART arm_5 347 392 IPR000225 GO:0005515
Bva10g01013 813 SMART arm_5 139 179 IPR000225 GO:0005515
Bva10g01013 813 SMART arm_5 672 713 IPR000225 GO:0005515
Bva10g01013 813 SMART arm_5 717 759 IPR000225 GO:0005515
Bva10g01013 813 SMART arm_5 589 631 IPR000225 GO:0005515
Bva10g01013 813 SMART arm_5 181 221 IPR000225 GO:0005515
Bva10g01013 813 CDD RING-Ubox_PUB 33 78 IPR045210 -
Bva10g01013 813 SMART Ubox_2 32 100 IPR003613 GO:0004842|GO:0016567
Bva10g01013 813 Coils Coil 256 276 - -
Bva10g01013 813 Pfam U-box domain 31 105 IPR003613 GO:0004842|GO:0016567
Bva10g01013 813 SUPERFAMILY ARM repeat 121 444 IPR016024 -
Bva10g01013 813 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 150 192 IPR000225 GO:0005515
Bva10g01013 813 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 1 811 - -
Bva10g01013 813 ProSiteProfiles HEAT repeat profile. 151 185 IPR021133 -
Bva10g01013 813 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 811 - -
Bva10g01013 813 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 112 IPR013083 -
Bva10g01013 813 SUPERFAMILY RING/U-box 22 110 - -
Bva10g01013 813 Gene3D - 113 234 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01013 Bva-Chr10 7430498 7434547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01013 2 813 U-box Gene Family AT1G76390 65.971 0.0 1033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01013 - - gmx:100789746 1363.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01013 10 7430498 7434547 Bva10g01013 10 7430498 7434547 ECH