Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01010 ATGGATGAGGCAGAGCTGAGTTTGCACGCATATATAGGTGGGACAAGACTTGGACAAACTCCAGCCTCTCCGTCGCTTCTCTCCCTTTTCGAAGCCCTAATTTCAATTCGCCCCGCTGTTTTCGTCATGAAAGGTGGAAAATCCAAGGCCGAATCTAAGAAAGCCGATGCcaaGCTTGCTGTGAATAAGAGAGGTGGCCCCGCCACTAAAGCGGGCAGGAAGATTAGTAAGGGGAAGGCCGCCAAAGACCCCAACAAGCCAAAGAGACCCCCCAgtgctttcttcgttttcatgGAGGAATTCCGGAAGCAGTTCAACAAGGAACATCCTGACAACAAATCTGTGTCTGCTGTTGGCAAAGCTGCTGGAGCAAAATGGAAGTCCTTGTCTGATGCTGAGAAAGCACCATATGCAGCTAAGGCCGAGAAGCGGAAGGCCGAgtatgagaagagtatgaaagCATATAACAAGAGACAGGCTGAAGGTCCCAATGCTGCCGAGGAAGACGAATCTGAGAAATCAATGTCAGAGGTgaatgatgaagatgaaggagACGAAGACGGCAGTGGCGAGgaagatgatgatgagtA 590 0.4441 MDEAELSLHAYIGGTRLGQTPASPSLLSLFEALISIRPAVFVMKGGKSKAESKKADAKLAVNKRGGPATKAGRKISKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKEHPDNKSVSAVGKAAGAKWKSLSDAEKAPYAAKAEKRKAEYEKSMKAYNKRQAEGPNAAEEDESEKSMSEVNDEDEGDEDGSGEEDDDE 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01010 196 Coils Coil 138 158 - -
Bva10g01010 196 Pfam HMG (high mobility group) box 87 156 IPR009071 -
Bva10g01010 196 MobiDBLite consensus disorder prediction 136 172 - -
Bva10g01010 196 CDD HMGB-UBF_HMG-box 87 153 - -
Bva10g01010 196 MobiDBLite consensus disorder prediction 52 93 - -
Bva10g01010 196 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 87 156 IPR009071 -
Bva10g01010 196 Gene3D High mobility group box domain 71 181 IPR036910 -
Bva10g01010 196 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 43 195 IPR031061 -
Bva10g01010 196 SMART hmgende2 86 157 IPR009071 -
Bva10g01010 196 SUPERFAMILY HMG-box 75 163 IPR036910 -
Bva10g01010 196 MobiDBLite consensus disorder prediction 106 196 - -
Bva10g01010 196 MobiDBLite consensus disorder prediction 173 196 - -
Bva10g01010 196 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 43 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01010 Bva-Chr10 7414243 7418359 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Bva10g01010 HMG_box 3e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01010 K25507 - jre:109011479 193.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01010 10 7414243 7418359 Bva10g01010 10 7414243 7418359 ECH