Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01006 ATGGGAGATGGTGCCATGTCGCCTGGTGCCTTGCTGGAAGCTCCACCTGAATCGTCCATGGATTTCAACTACATGGATGAACTTTTCTTAGATGGATGCTGGTTGGAAACCACAGCAGAAGGATCTGATTTCCTGCTGCAAAGTCCTTCTAATTGTAATCCCCTATTTGACCCTTCATTTTCATGGCCTATCATGGAAACTAATGGAGGTTTGAGCGTAAGCCCATCTCTCAATGGAAATCAAGAAGAAAGGCAAAGTCCCTTGTTTAATGAATCCCGGGAAACTCCTTCCAATGCTAAACCGGTTGGAAAagacataattaatattggaGGAAGTTGTAGTCAGTCTGAATTTCATTCGGTTGAAGGTTCTGAAGTAGTCAGAAGATGGTGGATTCAACCCACACCCACGTCTAATCTAGGCCCTGCATCTTCAGTAACGGAGAGACTAATTAGGGCACTTGTGTATATCAAGGAAATGAGTAGAGACAAAGATGTGCTTGTCCAAATATGGGTGCCAGTTAATGGAGGGGATAGGGAGATTCTAACAACTAATGACCTTCCTTTCTCGCTTGGAAGCACCAGTCAAAATCTTGCGAAATACAGAGAAATCTCTGAGAAATATCACTTTTCAGCTGAGGACGACTCAAAGGAGTTGGCGGCAGGACTGCCTGGTCGGGTTTTTAGGGGCAAGGTTCCTGAGTGGACTCCCGATGTTCGATTTTTCAGGAGTGATGAATACCCACGAGTTGACCATGCTCAAGAGTATGATGTGCGTGGAACTTTAGCTCTTCCTGTCTTTGAGAAAGGCAGTAGGAATTGCTTGGGTGTCATTGAGGTTGTCATGACTACCCAGCAAATCAAGTATCGTTCCCAACTTGAAAGTGTTTGCAAAGCACTTGagGCTGTTGATCTTAGAAGTTCTGGAATTTCAAGCATTCAGAATGTGAAGGAGGCATGCAACAAGTCCTACGAAGCTGTATTACCCGAGATCCAGGAGGTGTTAAGATCTGCATGTGAAATCTACAAGTTACCTTTAGCTCAAACCTGGGTGCCATGCATCCGACAAAGCAAAGAGGGCTGCCGGCACTcaaatgataattatttacGCTGCGTTTCTCCCGTGGATCATGCTTGCTATGTCGGTGATCCCAGTGTACAGGCTTTTCATGAGGCTTGCTCCGAGCATCACCTGTTAAAAGGTCAAGGCGTTGTCGGAGGAGCTTTTATGAGCAATCAACCATGCTTCTCAGCTGACATAACCTCTATGGGCAAGACAGAATATCCGCTGTCTCACCATGCAAGGATGTTTCGATTGCGGGCTGCTGTTGCTATACGTCTGCGAAGCATCCATTGTAGTGGAGATGATTTTGTGCTAGAGTTTTTCTTGCCCCTGGATTGCGTTGACGGTGAAGAACACAAGAAGATGCTTACTTCTTTGTCCATGATTATACAGAGGGTTTGCCATAGCTTACGGGTCATAACCAACAAGGAATTGGAGGAGGAGACTAGGTTATCAGTTGATGAAGTGATTGTGCCTGCAGAGAGTGTATCTGCTAGAACTGCTACTTGGACGGATCTCCAACGGAGCGGGACGGTTGCCTCATTGTGCGCTGCACAAAAATCAAGTGAAACATTTGCTAGAAAATTTTCTGACTTAAgccagcagcagcagcaacaacaacaacactCACACTCTGCTTTTGATGAGGGTAGCTTGTCAAGTTGGGGAACGGGTAAAACGGGGGAAAAAAGACGGACTAAAGCAGAGAAAACTATCACCTTGCAAGTTCTTCGGCAAAACTTTGCTGGAAGCCTAAAAGATGCTGCCAAAAATATAGGGGTTTGTACAACAACTTTGAAAAGGATCTGCCGTCAACATGGGATAAAGCGTTGGCCTTCCCGAAAGATAAAAAAGGTGGGTCACTCCTTACAAAAACTCCAACTTGTGATCGATTCAGTTCAAGGTGGCTCTGGTGCTTTTCAAATAGATTCGTTCTACTCAAACTTTGCGGAACTAGCAACTCCAAATTTGACAGGAACCAGCCTGTTGTCAGCTGCAAAGCAAAATGATAGCCATAATGCAAATCCATCAGCCACAGAGGCCGAACCTGGAATGTTAAGCCCATCAAAATCACCCTCTTCTTCAGGCTCAGGCTCAGGCAGTCAGAGTTCCTTTTCAAGCCATTCCTTTTCCAGCATTTCGGAGCAGCGTCACCTCACACTCAAACAGAATGTTGCCAGTAGCAAAGATCAAGATTGCAGTGGTGGTGGTGTGTTGAAGAGAGTAAGAAGTGAAGCAAAGCTAAAAGGGTCAAGTCTAGATGGAGCAATGCACTTGCCAAGATCACAAAGTCAGGAAGCACTTGGTCAACACCCAAAAGTTGAGTTTCTCCAGCCACGCACTCACCAAGTGGCTCAAAATCAAAAGGAGGATCCTTTCAGAGTAAAAGTGACATATGGAGATGAGAAAAGTCGGTTTCGGATGCCAAAGAATTGTGCTTATGAAGATCTATTGGGAGAAATTTCTAAACGATTTAACATCGATGATATGAGCAAATTCGATATTAAGTATTTGGATGATGACTCTGAGTGGGTATTACTAACATGTGCTGCTGACTTGGAGGAGTGCATTGATGTTTGTCAGAGCCGTACAATCAAACTCTCTCTCCATGTTTCTAATCATCGTATGGGAAGACAAGTTCATTA 2708 0.4369 MGDGAMSPGALLEAPPESSMDFNYMDELFLDGCWLETTAEGSDFLLQSPSNCNPLFDPSFSWPIMETNGGLSVSPSLNGNQEERQSPLFNESRETPSNAKPVGKDIINIGGSCSQSEFHSVEGSEVVRRWWIQPTPTSNLGPASSVTERLIRALVYIKEMSRDKDVLVQIWVPVNGGDREILTTNDLPFSLGSTSQNLAKYREISEKYHFSAEDDSKELAAGLPGRVFRGKVPEWTPDVRFFRSDEYPRVDHAQEYDVRGTLALPVFEKGSRNCLGVIEVVMTTQQIKYRSQLESVCKALEAVDLRSSGISSIQNVKEACNKSYEAVLPEIQEVLRSACEIYKLPLAQTWVPCIRQSKEGCRHSNDNYLRCVSPVDHACYVGDPSVQAFHEACSEHHLLKGQGVVGGAFMSNQPCFSADITSMGKTEYPLSHHARMFRLRAAVAIRLRSIHCSGDDFVLEFFLPLDCVDGEEHKKMLTSLSMIIQRVCHSLRVITNKELEEETRLSVDEVIVPAESVSARTATWTDLQRSGTVASLCAAQKSSETFARKFSDLSQQQQQQQQHSHSAFDEGSLSSWGTGKTGEKRRTKAEKTITLQVLRQNFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGGSGAFQIDSFYSNFAELATPNLTGTSLLSAAKQNDSHNANPSATEAEPGMLSPSKSPSSSGSGSGSQSSFSSHSFSSISEQRHLTLKQNVASSKDQDCSGGGVLKRVRSEAKLKGSSLDGAMHLPRSQSQEALGQHPKVEFLQPRTHQVAQNQKEDPFRVKVTYGDEKSRFRMPKNCAYEDLLGEISKRFNIDDMSKFDIKYLDDDSEWVLLTCAADLEECIDVCQSRTIKLSLHVSNHRMGRQVH 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01006 902 SMART PB1_new 813 893 IPR000270 GO:0005515
Bva10g01006 902 MobiDBLite consensus disorder prediction 550 580 - -
Bva10g01006 902 PANTHER PROTEIN NLP8 17 898 IPR045012 GO:0003700
Bva10g01006 902 MobiDBLite consensus disorder prediction 71 101 - -
Bva10g01006 902 ProSiteProfiles RWP-RK domain profile. 579 660 IPR003035 -
Bva10g01006 902 MobiDBLite consensus disorder prediction 71 97 - -
Bva10g01006 902 SUPERFAMILY CAD & PB1 domains 807 894 - -
Bva10g01006 902 ProSiteProfiles PB1 domain profile. 813 893 IPR000270 GO:0005515
Bva10g01006 902 Pfam RWP-RK domain 592 640 IPR003035 -
Bva10g01006 902 Gene3D - 809 894 - -
Bva10g01006 902 PANTHER PROTEIN NLP4 17 898 - -
Bva10g01006 902 Pfam PB1 domain 813 893 IPR000270 GO:0005515
Bva10g01006 902 MobiDBLite consensus disorder prediction 550 588 - -
Bva10g01006 902 CDD PB1_NLP 814 891 IPR034891 -
Bva10g01006 902 MobiDBLite consensus disorder prediction 688 730 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01006 Bva-Chr10 7382549 7386436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01006 20 897 NLP Transcription Factor Family AT1G20640 48.444 0.0 742
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Bva10g01006 PB1 1.5e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01006 - - gmx:100790922 1088.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01006 10 7382549 7386436 Bva10g01006 10 7382549 7386436 ECH