LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva10g00981	ATGGCTAATGAAGGTGCCAGTACTAGCAATGTTTCAGCAGAATCTTCAGATTCAACTGTTCAACTCAACATCAAGACTTTAGATTCCCGGATTTACAGTTTTCAAGTGGATAAAAATATGCCAGTTTCATTATTCAAGGAGAAAATAGCGAACGAAATTGGTGTTCCAGTTAATCAGCAACGATTGATTTTCAGGGGAAAAGTCTTAAAGGATGATCATGTCATTTCTGAGTATCATGTTGAGAATGGGCATACACTGCATTTAGTTGAAAGGCAACCAAATCAGTTGCAAGCTTCTGGTACTAGCTCTGTTGAGACAACTGGTACTAATGGTAACCGAGGCAATGATGCAACCTCTGGGGCTCCTCGAAATCGCGTCGGGCAAATTTCACACAGTGTTGTTCTTGGGACCTTTAATGTTGGGGAGCAAGGTGAAAGCATTGCTTCAGACCTTACTCGGGTTATCGGGGCAGTTTTGAATTCTATCGGAATTGGTGGTCAGAGCACGAATAGTATCAATAGTGCTATGCAGTCTTCTTCTTTGCCAAATCTATCTGGTCAAGCTCCTGTGGTCAATGAAGCTGAAGGAATGCGTGTGGGAAATCAGAACCAAGCAGGAAATCAATCACAGTCTGCACAGACATTTCCTGGTCCATTCCAATCTTTGCCTCAAGTTGTTCAGATTCCTCTGGCTGCTGGAGCCATACCTGTTCCTTCACTCAATGCACCAATTCCTGACTCACTACACACCCTGTCTGAATTTATAAATCGCATGGAGCGGACATTATCACAAAATGGCTATCAACcaaatttatcttcaaatgACACTGGAGAGCAACAAGTGGAATTATCTTCAAATGTGCAAGGATTGCCTACTCCTGAAGCATTAAGCAGTGTCTTGCGTCAAACAGAAAGGCTCCTCAATGGTCATGCTGTTGCCGCACTATCTCATATTGCTGGGCACTTGGAGAGAGAGGGTACAACTTCTGATCCTAGTGTAAGGGGCCAAATACAGTCAGAGTCAATGCAAATGGGAATTGCCATGCAGCATTTGGGTTCACTTCTACTTGAGCTTGGCCGTACAATTTTGACGTTGCGCATGGGACAGTCTGCTGCAGAATCTGTTGTTAATGCTGGGCCAGCAGTTTATATTTCACCATCAGGGCCTAATCCTATAATGGTGCAGCCTTTTCCTCTTCAGACCAACTCCCTATTTGGTGGTTCTGTTTCTCCTTCATCTCCTGCGACGTTTGGTGGTATTGGTATTGGAACTGCCCCTAGGAACATAAACATCCATATACATGCTGGAACCTCTCTCGCACCAATTGTTTCTGCTATTAGTTCAAGGCCAATTAATGGGGAAGCGACACAAGGTGAACAACGTAATGGTCCTGGATCTGGTGATTTAGGATCAACAAGGGTGTTACCTGTTAGAAATGTTGTTGCTGCAGCTGTGCCGTCACGCCCTCCTGGTGTTGCTGTTGCCAGTGGCTCACAAACTGGTCTTAGTATTTCTACTTCACAACCTCCTTCAGATTCAGTTTCATTACAATCTGTTTTAGCTGAAGTCAATTCCCGCCTTAGAAACTTCGCTGGGAATCTGCGAGGAGATAGCACAGTTCTATCAGGTCAAGTGGAGTCAACTGGTCAGGACTTATCTGTTGGTGCTGAATCCCGACCTGCTTCTGGGAATGAACAGCTAGATACCATGGAGATTGATAATGCTGGAGCTGCTCCTCTGTCTTCGGTTAGACGCACATCTGAAAGCCGAGTGGATGAGCCCCAACTTGAGGCAGCTCAAACCTGTAACAATGAGGGTGGAGATGCTTCaagcaaaaattttatttctgctTCTTTTGATGGGGATTCTGTAAATTCTTCACGTGGAGAAACAATATCAAAGTCAGAGAATGGGCAAGAAATTGCTTCATCTGCAGGGGGGAGACAAGATCTAGATGGAGGTGGCAAAGCTGCTCCACTTGGATTGGGTTTGACTGGTTTGGAACGTAAGAGGCGATCCAGACTTCAACCTCCTGTAAGTAAAGGTGCTGATGGTGGTTCAACAAGTTCTGTTGATCAAAATCAACAAGCTAGAATAGGTGGTCAGCATATATTGCAAGCTCTTGCAAGTCATGGATCTGCAGTGACTCAGAGAAATGCTGAGGGACCATCCCAAGGATCCTCTGCCTCTGGTGATGGCCAGGTCGATGTGGCTGGTGTTATGTCTCAGGTTTTGCATAGCCCCGCTTTGAATGGTTTGTTGGCAGGTGTTTCCCAGCAAACTGGAGTTGGGTCACCTGATGTCTTTAGGAATATGTTGCAGCAGTTCACGCAGAGCCCACAGATGAGGAATAGTTTTAATCACATTATCCAGCAGGTTGGCAGTCAGGACATGGGAAATATATTTGCTGGAATGGAAAGAGGGCAAGGTGGTGGGATTGACTTGTCTAGGATGTTTCAGCAGATGATGCCCATTGTATCTGAAGCTCTTGGCAGTATAACCCCTTCTCAGTCATTTTCTGCAGCAGAACCGGAGTCCCAGGCACCCTACAGAGATAGTAGACCAAGCAGAGTTGATAATTCTGATAATCAAAGTTTACAGATAAACGTTCAACCAATGGCGGGGACGATTGAGGGCCGGAGTCCCCCTGCTGTTGTTTTCCGTGCTGTGGCTGAAAATGCTGTCCAGCTGTCTGGCAGTGGAAGTACTTCTAATGCTCTTCTGGAAGAGTTATGCTGTGATGACGGCCTTGCCAGTGAATATGTTGAGATGTTGCGACGTGATTTAAGTGAGCGAGTTAATGGTGAACCTGGGCCGGATAAGTGTTA	2828	0.4512	MANEGASTSNVSAESSDSTVQLNIKTLDSRIYSFQVDKNMPVSLFKEKIANEIGVPVNQQRLIFRGKVLKDDHVISEYHVENGHTLHLVERQPNQLQASGTSSVETTGTNGNRGNDATSGAPRNRVGQISHSVVLGTFNVGEQGESIASDLTRVIGAVLNSIGIGGQSTNSINSAMQSSSLPNLSGQAPVVNEAEGMRVGNQNQAGNQSQSAQTFPGPFQSLPQVVQIPLAAGAIPVPSLNAPIPDSLHTLSEFINRMERTLSQNGYQPNLSSNDTGEQQVELSSNVQGLPTPEALSSVLRQTERLLNGHAVAALSHIAGHLEREGTTSDPSVRGQIQSESMQMGIAMQHLGSLLLELGRTILTLRMGQSAAESVVNAGPAVYISPSGPNPIMVQPFPLQTNSLFGGSVSPSSPATFGGIGIGTAPRNINIHIHAGTSLAPIVSAISSRPINGEATQGEQRNGPGSGDLGSTRVLPVRNVVAAAVPSRPPGVAVASGSQTGLSISTSQPPSDSVSLQSVLAEVNSRLRNFAGNLRGDSTVLSGQVESTGQDLSVGAESRPASGNEQLDTMEIDNAGAAPLSSVRRTSESRVDEPQLEAAQTCNNEGGDASSKNFISASFDGDSVNSSRGETISKSENGQEIASSAGGRQDLDGGGKAAPLGLGLTGLERKRRSRLQPPVSKGADGGSTSSVDQNQQARIGGQHILQALASHGSAVTQRNAEGPSQGSSASGDGQVDVAGVMSQVLHSPALNGLLAGVSQQTGVGSPDVFRNMLQQFTQSPQMRNSFNHIIQQVGSQDMGNIFAGMERGQGGGIDLSRMFQQMMPIVSEALGSITPSQSFSAAEPESQAPYRDSRPSRVDNSDNQSLQINVQPMAGTIEGRSPPAVVFRAVAENAVQLSGSGSTSNALLEELCCDDGLASEYVEMLRRDLSERVNGEPGPDKC	942

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva10g00981	942	MobiDBLite	consensus disorder prediction	92	125	-	-
	Bva10g00981	942	MobiDBLite	consensus disorder prediction	493	513	-	-
	Bva10g00981	942	SMART	ubq_7	20	91	IPR000626	GO:0005515
	Bva10g00981	942	SUPERFAMILY	Ubiquitin-like	15	94	IPR029071	-
	Bva10g00981	942	MobiDBLite	consensus disorder prediction	711	732	-	-
	Bva10g00981	942	PANTHER	OS07G0498800 PROTEIN	2	939	-	-
	Bva10g00981	942	CDD	Ubl_ubiquitin_like	22	89	-	-
	Bva10g00981	942	MobiDBLite	consensus disorder prediction	542	694	-	-
	Bva10g00981	942	MobiDBLite	consensus disorder prediction	593	644	-	-
	Bva10g00981	942	MobiDBLite	consensus disorder prediction	711	734	-	-
	Bva10g00981	942	MobiDBLite	consensus disorder prediction	836	863	-	-
	Bva10g00981	942	PANTHER	LARGE PROLINE-RICH PROTEIN BAG6	2	939	-	-
	Bva10g00981	942	MobiDBLite	consensus disorder prediction	542	569	-	-
	Bva10g00981	942	Pfam	Ubiquitin family	22	92	IPR000626	GO:0005515
	Bva10g00981	942	MobiDBLite	consensus disorder prediction	453	467	-	-
	Bva10g00981	942	MobiDBLite	consensus disorder prediction	453	472	-	-
	Bva10g00981	942	ProSiteProfiles	Ubiquitin domain profile.	20	95	IPR000626	GO:0005515
	Bva10g00981	942	MobiDBLite	consensus disorder prediction	487	513	-	-
	Bva10g00981	942	Gene3D	-	7	104	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva10g00981	Bva-Chr10	7248451	7257808	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva10g00981	20	91	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	37.500	7.08e-11	58.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva10g00981	-		-	gmx:100783611	1229.93