Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00977 ATGGGTTACCTAAACAGTCAAGATAGCGGTCAAACTGATCAACAGAATAATGCTGGTTCGGTTTTAcgggaaggaaaagaaatcctAATCCAGGCATTCAACTGGGAGTCTCACAAACATGATTGGTGGCGACATTTAGAAGGAAAAGTTTCTGATATAGCAAAATCCGGATTTACGTCAGCATGGCTGCCACCACCAACTCATTCCTTTGCACCTCAAGGTTACACTCCCCAGAATCTTTACTCACTGAATAGTTCATACGGATCTGAGTATCAGCTAAAAGCTTTGCttcaaaaaatgaagcaaTACAAAGTCAGAGCAATGGCTGATATAGTTATCAATCATCGTGTTGGCACAACCCAAGGACATGGGGGGATGTATAACCGTTTTGATGGAATTCCATTATCATGGGATGAACGTGCTGTGACATCATGTACCGGTGGACGGGGCAATAGAAGCACAGGGGACAATTTCCCTGGGTTTCCAAATATTGACCATAGCCAGGATTTTGTGCGAAAGGATCTCATAGGATGGCTACGGTGGCTACGCACCAATGTAGGCTTCCAGGATTTTCGCTTTGACTTTGCAAAAGGTTTTTCCCCGAAATATGTGAAAGAATACATTGAAGGAGCAAAGCCAGTGTTTTCTGTAGGCGAGTACTGGGATTCTTGCAACTATCATGGTTCCAACTTGGACTACAACCAAGATAGCCATAGGCAACGGATAATCAATTGGATTGATGGCACAGGACAGCTTTCAACTGCATTTGACTTTACAACAAAAGGGATTCTTCAGGAAGCTGTCAAGGGAGATTTCTGGCAACTACGTGATCCTCAAGGAAAACCACCAGGTGTGATGGGATGGTGGCCTTCAAGGTCAGTTACATTTCTTGAGAACCACGATACGGGCTCCACACAGGCTCATTGGCCCTTCCCCTCAAATCATGTTATGGAGGGGTATGCTTATATTTTGACTCACCCAGGGATGCCGACAGTTTTCTATGACCACTTGTATGATTGGGGTAACTCCATTCATGACCAGATTGTGAAGTTGATTGACATTCGCAAGCATCGAGGTATTCACAGCAGATCATCTATCAGGATTCTGGAGGCCAGGCAAAATCTTTACTCTGCAATCATCGGAGAGAAAGTGTGCATGAAGATTGGGGATGGTTCGTGGTGCCCGTCTGGGAGGGAATGGTCATTGGCAACCTGTGGCCACAGATATGCAGTATGGCACAAACAGTG 1247 0.4395 MGYLNSQDSGQTDQQNNAGSVLREGKEILIQAFNWESHKHDWWRHLEGKVSDIAKSGFTSAWLPPPTHSFAPQGYTPQNLYSLNSSYGSEYQLKALLQKMKQYKVRAMADIVINHRVGTTQGHGGMYNRFDGIPLSWDERAVTSCTGGRGNRSTGDNFPGFPNIDHSQDFVRKDLIGWLRWLRTNVGFQDFRFDFAKGFSPKYVKEYIEGAKPVFSVGEYWDSCNYHGSNLDYNQDSHRQRIINWIDGTGQLSTAFDFTTKGILQEAVKGDFWQLRDPQGKPPGVMGWWPSRSVTFLENHDTGSTQAHWPFPSNHVMEGYAYILTHPGMPTVFYDHLYDWGNSIHDQIVKLIDIRKHRGIHSRSSIRILEARQNLYSAIIGEKVCMKIGDGSWCPSGREWSLATCGHRYAVWHKQ 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00977 415 Gene3D - 360 414 IPR013780 -
Bva10g00977 415 PANTHER ALPHA-AMYLASE 2-RELATED 23 414 - -
Bva10g00977 415 CDD AmyAc_arch_bac_plant_AmyA 28 366 - -
Bva10g00977 415 SMART aamy 27 355 IPR006047 GO:0005975
Bva10g00977 415 Gene3D Glycosidases 27 359 - -
Bva10g00977 415 Pfam Alpha-amylase C-terminal beta-sheet domain 358 413 IPR012850 GO:0004556|GO:0005509|GO:0005975
Bva10g00977 415 PANTHER ALPHA-AMYLASE 23 414 - -
Bva10g00977 415 SUPERFAMILY Glycosyl hydrolase domain 360 414 - -
Bva10g00977 415 PIRSF Alpha-amylase_plant 4 415 IPR013775 GO:0004556|GO:0005509|GO:0005975
Bva10g00977 415 Pfam Alpha amylase, catalytic domain 53 116 IPR006047 GO:0005975
Bva10g00977 415 SUPERFAMILY (Trans)glycosidases 35 346 IPR017853 -
Bva10g00977 415 SMART alpha-amyl_c2 356 414 IPR012850 GO:0004556|GO:0005509|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00977 Bva-Chr10 7205712 7210553 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00977 1 414 Glycoside Hydrolase AT1G76130 77.295 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00977 K01176 - pop:7496889 758.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00977 10 7205712 7210553 Bva10g00977 10 7205712 7210553 ECH