Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00976 ATGTCACCGGTAGCTAACAACAAGGATTGGAACGGCGCCGAGTCCAAGCATTACCCTTCCCCACTTGCCTCTCACGAGGACGTGGTTAGGGACCCCACTGTTTTCTGGGACACTCTCAGGCGCTTTCACTTTGTTATGGGCACCAAATTCATGATTCCTGTAATCGGAGGAAAGGAACTGGATTTGCACGTTCTTTACGTGGAGGTTACTAGAAGGAGTGGTTATGAGAAGGTAGTTGAAGAGAAGAAGTGGAGGGAACTGAGTAATGTATTCAGATTCTCTCCTACAACTACAAGTGCTTCTTATGTATTGAGGAAGCACTACTTTAATCTTCTATACCATTACGAGCAAGTTTACTTCTTCAAGGTTCGGGGTCCTGTGTATAGTCCATCAGATGCATTTTCTGTTGGCAAACAGTCTTGGAAACCTGAATTAGCTATTGTGGAATATTCGCCTAAGCCCATGAATAAGCAACCTGATTCCCACATTGGAGATGCTTCATCCTTTTCTGCACTTGGAACGATCGAGGGGAAATTTGATTGTGGTTACTTGGTGTCTGTGAAACTGGGTTCGGAGGTTCTTAGAGGTGTGCTTTACCATCCGGAGCGATCAGTTCCCTCTTCATCAAATTCGCAATATGGTAGTGCCATTGTACCATATAATAGCAAATCTCGACGTAGGCGAAGGAGGAACAGAAGAAGGGCGGACCCTAACTACCCGAAGCCAAATAGAAgtggttataattttttctttgctgaAAAACATTATAAGCTCAAGGCCCTGTATCCAAACAGAGAAAGGGAGTTTACCAAAATGATTAGCCAGTCTTGGAATGGTCTTAGCccagaagagaaaatgGTTTACCAGAACATTGGCTTGAGAGACAAGGAAAGATACAGGAGAGAATTGAGGGAGTACGAAGAGAGAATCAAGCTTAACCCGACCGTAGAACTTAGGCACTG 962 0.4293 MSPVANNKDWNGAESKHYPSPLASHEDVVRDPTVFWDTLRRFHFVMGTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVEEKKWRELSNVFRFSPTTTSASYVLRKHYFNLLYHYEQVYFFKVRGPVYSPSDAFSVGKQSWKPELAIVEYSPKPMNKQPDSHIGDASSFSALGTIEGKFDCGYLVSVKLGSEVLRGVLYHPERSVPSSSNSQYGSAIVPYNSKSRRRRRRNRRRADPNYPKPNRSGYNFFFAEKHYKLKALYPNREREFTKMISQSWNGLSPEEKMVYQNIGLRDKERYRRELREYEERIKLNPTVELRH 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00976 320 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Bva10g00976 320 SMART bright_3 30 121 IPR001606 GO:0003677
Bva10g00976 320 SMART hmgende2 239 308 IPR009071 -
Bva10g00976 320 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Bva10g00976 320 MobiDBLite consensus disorder prediction 203 242 - -
Bva10g00976 320 SMART ARID_2 26 116 - -
Bva10g00976 320 SUPERFAMILY ARID-like 24 123 IPR036431 GO:0003677
Bva10g00976 320 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 240 307 IPR009071 -
Bva10g00976 320 CDD HMGB-UBF_HMG-box 240 299 - -
Bva10g00976 320 MobiDBLite consensus disorder prediction 203 219 - -
Bva10g00976 320 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Bva10g00976 320 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 11 314 - -
Bva10g00976 320 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 11 314 - -
Bva10g00976 320 SUPERFAMILY HMG-box 237 309 IPR036910 -
Bva10g00976 320 Gene3D - 16 125 IPR036431 GO:0003677
Bva10g00976 320 Gene3D High mobility group box domain 223 314 IPR036910 -
Bva10g00976 320 Pfam HMG (high mobility group) box 240 307 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00976 Bva-Chr10 7200971 7203463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00976 13 312 ARID Transcription Factor Family AT1G76110 65.696 1.01e-136 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Bva10g00976 ARID 4.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00976 - - jre:108984522 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00976 10 7200971 7203463 Bva10g00976 10 7200971 7203463 ECH