Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00960 ATGCTCAAttcaattcttttggcactttTCCTGCCCTGTGTTGGTATGAGCGCCGTCTTCATAGTATATATGTGCCTTCTCTGGTACGCCACTACGCACCAGCCCGATGTTACGCTACCGGTGAAGTCTCTTCCCGAGAAAGGCTTGTCGCCTTCGGAGCTAGAGAAGTTACCGAAAATCACCGGAAAGGAACTGATCATGGGCAACGAATGCGCCGTCTGCCTTGACGAGATCGAGAACGAGCAACCGGCTCGACTAGTTCCCGGTTGCAACCACGGATTCCATGTGGAATGCGCTGACAAATGGCTTTCAAAGCATCCTCTGTGTCCGGTTTGTAGAGCTAAGCTTGATCCTCAGCTTCTCAATTCATCTGAAATTCCATGCTA 386 0.4845 MLNSILLALFLPCVGMSAVFIVYMCLLWYATTHQPDVTLPVKSLPEKGLSPSELEKLPKITGKELIMGNECAVCLDEIENEQPARLVPGCNHGFHVECADKWLSKHPLCPVCRAKLDPQLLNSSEIPC 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00960 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 119 IPR013083 -
Bva10g00960 128 SUPERFAMILY RING/U-box 56 119 - -
Bva10g00960 128 SMART ring_2 71 112 IPR001841 -
Bva10g00960 128 Pfam Ring finger domain 69 113 IPR001841 -
Bva10g00960 128 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Bva10g00960 128 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 125 - -
Bva10g00960 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00960 Bva-Chr10 7121856 7122242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00960 1 128 C3H Transcription Factor Family AT5G42200 52.941 2.65e-44 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00960 K19037 - gmx:100817919 216.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00960 10 7121856 7122242 Bva06g01877 06 12842942 12844152 BWGD
Bva10g00960 10 7121856 7122242 Bva10g00960 10 7121856 7122242 ECH