LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva10g00950	ATGGTTACCACAACTGATTCTTCTCCTAAACATCACTCGCCGACTTATGCTGGAATATCTGGGACTGGGGATAGCAATAGCCCTAAGTTCCCGCGAAAAAACCTACCGTCTCCCTGGGCTCAAGTTGTCCGAGGTGGTGAGCCAGAATCAGCCTCGGGCATTCACCAATCGCCGCCGTCATcgtcttcttcatcatcatcgcTGACTATCTTTGTGCCGGACCTGACACCATCGTCGGATTCCTCCCCGAAGGCGGGTACTGCTTCACTGCCGGTGGATAATTTTAATACTGCCGCTGCAGATACCTCTGATAGTAATAACGGCAATGCGGGTCGGCCGAAGAAGCCTGCTTGGAACAAGCTCTCTAACGGCGTTGTCGAGGTTGGTCCTGTAATGGGCGCGGTCTCTTGGCCAGCTTTATCTGAATCCACCAAGGCTTCGACTAAAATGTTAGCTGACTCGTCCTCAAAGAGTATCTCGGATGGATCACTCTCCAGTACTCAGGGGCCTGTTACTTTACATTCACCTCAGAAACAAGGTACTAGTAATGCAAAACCAAACTCTTCCAACTATAATAGACAAAGATCAGTGAAGCGAGGTGGTGGCAGCAACATTGGGTCTGGCACTGTACAGAGCAGTTTCTCTAACCCTCCCCCACCTCCTCCTCCACCACCCTTTCCTGTATTTCAGGTCCCTCCTAGTAGTTATGGTAATGTGGTACCAGGAGTGCCTGATAATTCTACAAGAAACTGGGATACGAGACCACTAGTTGGTAGCTTTGTGCCAGCGGTGAATGATCATAGGAGTTCCTCACGAAGGGGTAATTTTGGTCCCCATCCTCGTGGAGATGGCCCCTATCATAACAATTACGGGGGGAGGCGTGATCAGGATCGTGGAAATACGCACCACCAAAGGGTGCCTCCAAGGGGATTAGTAAGGCATCCCCCACCTAACGCTGCTGCATTTGTGCCTCCTCAGCCCGTGGGAGGACCTTTTGTAAACCCCATGGGTTTTCCTGAGTTCTATTACTTCCCAACTCTGCCATTGGAACCCTTCAGGGGCATGCCGTTCTTTACTCATAGCCCTCCGGCTATATTCTACCCTGTTGAAGAGCATCCTCTGACCAATATGAtattgaatcaaattgaatattacTTTAGTGATGGAAATTTAGTCaaagatgaatttttaagaTCCAATATGGATGAACAGGGTTGGGTTCCAATTACTTTGATAGCAAACTTCCCCCGAGTTAAAAATCTGACAAGCAACATTCAGTTAATACTGGATTCATTGAGAACTTCCACTGTTGTGGAAATGCAGGGTGACAAGCTGAGGAGGCGCAATGAATGGATGAAGTGGCTGCCATCTGCTCAACTGCGGACTGATTCTGGTTCAGTATCCCCTGGAGGGTCAAGTCACAATAACCTAGCCactaattttcaaaagatCACTTTAGAAGAAGCAACTTCTGATAAAAGTAATATGGAGCCTATCACAGATGCCTTCACAGGAAGATTTCCTACAGAGTCTCAACTTCCAAATAGCGATGCCACAAGGGGTAGCAATTA	1571	0.464	MVTTTDSSPKHHSPTYAGISGTGDSNSPKFPRKNLPSPWAQVVRGGEPESASGIHQSPPSSSSSSSSLTIFVPDLTPSSDSSPKAGTASLPVDNFNTAAADTSDSNNGNAGRPKKPAWNKLSNGVVEVGPVMGAVSWPALSESTKASTKMLADSSSKSISDGSLSSTQGPVTLHSPQKQGTSNAKPNSSNYNRQRSVKRGGGSNIGSGTVQSSFSNPPPPPPPPPFPVFQVPPSSYGNVVPGVPDNSTRNWDTRPLVGSFVPAVNDHRSSSRRGNFGPHPRGDGPYHNNYGGRRDQDRGNTHHQRVPPRGLVRHPPPNAAAFVPPQPVGGPFVNPMGFPEFYYFPTLPLEPFRGMPFFTHSPPAIFYPVEEHPLTNMILNQIEYYFSDGNLVKDEFLRSNMDEQGWVPITLIANFPRVKNLTSNIQLILDSLRTSTVVEMQGDKLRRRNEWMKWLPSAQLRTDSGSVSPGGSSHNNLATNFQKITLEEATSDKSNMEPITDAFTGRFPTESQLPNSDATRGSN	523

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva10g00950	523	MobiDBLite	consensus disorder prediction	1	121	-	-
	Bva10g00950	523	MobiDBLite	consensus disorder prediction	141	315	-	-
	Bva10g00950	523	MobiDBLite	consensus disorder prediction	505	523	-	-
	Bva10g00950	523	PANTHER	LA-RELATED PROTEIN 1B	5	505	-	-
	Bva10g00950	523	MobiDBLite	consensus disorder prediction	491	523	-	-
	Bva10g00950	523	MobiDBLite	consensus disorder prediction	53	112	-	-
	Bva10g00950	523	PANTHER	LUPUS LA PROTEIN-RELATED	5	505	IPR045180	-
	Bva10g00950	523	SUPERFAMILY	"Winged helix" DNA-binding domain	365	456	IPR036390	-
	Bva10g00950	523	MobiDBLite	consensus disorder prediction	141	213	-	-
	Bva10g00950	523	CDD	LAM	376	448	-	-
	Bva10g00950	523	MobiDBLite	consensus disorder prediction	240	254	-	-
	Bva10g00950	523	MobiDBLite	consensus disorder prediction	1	32	-	-
	Bva10g00950	523	Gene3D	-	367	457	IPR036388	-
	Bva10g00950	523	Pfam	La domain	378	433	IPR006630	-
	Bva10g00950	523	SMART	la	372	450	IPR006630	-
	Bva10g00950	523	ProSiteProfiles	La-type HTH domain profile.	368	457	IPR006630	-
	Bva10g00950	523	MobiDBLite	consensus disorder prediction	288	304	-	-
	Bva10g00950	523	MobiDBLite	consensus disorder prediction	214	231	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva10g00950	Bva-Chr10	7079367	7083422	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva10g00950	K18757		-	gmx:100785504	605.52

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva10g00950	10	7079367	7083422	Bva06g01883	06	12870604	12871155	BWGD
	Bva10g00950	10	7079367	7083422	Bva10g00950	10	7079367	7083422	ECH