Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00913 ATGGCTCTGCTCACTTTCTTGCCCCAACAGTCAGAGCCCAAAAAGCAAGCGTCAAACTCAAAACGCAAGCGAAAGCAGCAGAAACCACCGTCTTCGTGGGACCAAATCAAGAACCTCCTCACCTGCAAACAGATCGAAGGATCCAGAATCCACGACCCATCCAAAAGCGGCACCGAAGCAGCTGGCTACTCCAAGCTAGGATCTTCTTGTAGCTCTATATGTAGCTTTAGAGACGTTGTTCAAGGCAACACGAGAGTTGTTCACAGGGGTGATAATTCCTCGCCGGAGAGCAGCATTGTGGGTCAGGAAACTGGGCTACTGAGTCGGAGGCCACTCACTGTGTCGTCAACGCGTTCGGTATCGTCAGGGTCGGGAAAACCCCACGGTGAAGCAACATACACGTCATCTTCGAGAGGGATGCAATTCAGGAAGCTCTCGGGGTGCTATGAATGCCACATGATCGTAGACCCTAGCAGGCTTCCAATTCTAAGGAGCTCCGTCTGTAGTTGCTCTCACTGTGGGGAGATCTTCCCCAAGATGGAAAGCCTGGAGCTTCATCAAGCTGTTCGTCATGCAGTCTCGGAGCTGGGTCTGGAAGATTCGGGTCGGAACATTGTGGAGATCATTTTCAAATCAAGCTGGCTCAAGAAAGACAGCCCTCTCTGCAAGATCGAACGGATACTGAAAGTTCATAATACCCAACGCACCATTCAGCGGTTCGAGGACTGCCGAGACGCAGTGAAGACACGCGCTCTCAACAGCAACAAAAAGAATCCCAGATGCGCAGCGGATGGCAACGAGCTCTTACGGTTCCACTGCACGAGCCTAACGTGCTCGCTGGGTGCACGCGGCTCATCCAGCTTGTGCGGCTCCGTTCCTGGCTGCGGCGTTTGCACAATCATCAGGTACGGATTTCAGGGCAAGcctggtggtggtggtgcgGGTAACGGTGGTGAAAACTGCAAGGGAGTTCGGACCACAGCCAGCAGTGGGAGGGCGCACGACTCATTGCAAAGCACTGACAGTAGAAGAGCAATGCTGGTTTGCCGTGTGATTGCCGGGAGAGTGAAGCACGTGCCAGACGAGGCACCATCGGAGGAGGGCGCTGTGTCGGCTGGCTCCTATGATTCCGTAGCCGGGTACGCCGGGATATACTCGAATCTCGAAGACTTGATTGTATTCAATCCGAGGGCTATTCTTCCTTGTTTTGTTGTGATTTACAAAGTACTTCCTTGTTG 1238 0.5218 MALLTFLPQQSEPKKQASNSKRKRKQQKPPSSWDQIKNLLTCKQIEGSRIHDPSKSGTEAAGYSKLGSSCSSICSFRDVVQGNTRVVHRGDNSSPESSIVGQETGLLSRRPLTVSSTRSVSSGSGKPHGEATYTSSSRGMQFRKLSGCYECHMIVDPSRLPILRSSVCSCSHCGEIFPKMESLELHQAVRHAVSELGLEDSGRNIVEIIFKSSWLKKDSPLCKIERILKVHNTQRTIQRFEDCRDAVKTRALNSNKKNPRCAADGNELLRFHCTSLTCSLGARGSSSLCGSVPGCGVCTIIRYGFQGKPGGGGAGNGGENCKGVRTTASSGRAHDSLQSTDSRRAMLVCRVIAGRVKHVPDEAPSEEGAVSAGSYDSVAGYAGIYSNLEDLIVFNPRAILPCFVVIYKVLPC 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00913 412 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Bva10g00913 412 ProSiteProfiles Zinc finger C2H2 type domain profile. 168 196 IPR013087 -
Bva10g00913 412 PANTHER BNAC02G23540D PROTEIN 21 410 - -
Bva10g00913 412 Gene3D - 193 409 - -
Bva10g00913 412 SUPERFAMILY ADP-ribosylation 193 408 - -
Bva10g00913 412 MobiDBLite consensus disorder prediction 86 136 - -
Bva10g00913 412 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 21 410 - -
Bva10g00913 412 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00913 Bva-Chr10 6911387 6913683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00913 1 410 C2H2 Transcription Factor Family AT1G75710 62.661 6.78e-180 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva10g00913 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00913 - - vvi:100250572 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00913 10 6911387 6913683 Bva10g00913 10 6911387 6913683 ECH