Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00911 ATGTCGAGTTCTGAGCAGGATCAAAGGCGATCGCATGAGCTATCTCAATTCCAGTTCCAGCTTTTGCATTCTCATTCCCAATTTCATCACAATCCTTCTTTCGCTCCTTATTCTGCCTCTCCCCACaccctttcctttcttccctCTTCTCCCAACCAATCGCCTTCTCAAGACGCACGTTCTGCTCTTGCTAAGCTTGCCTTGGATCAAAgatatgaaattgataattCCAAGTCGCAGAGGAGTAATTCTGAAATTTCTCCCTCACTTAAAACCGAGCATGGCACAAGTGGAAAGCGACATGGTAAATCAAAAGTTGCAAGACCTGCAAAACCTAGGACACAAGGATCAAATACCGAGGCTCCTCATTTTTCTGTAGCTAACAATTGTCGTTACGATAGTTCCTTAGGATTGTTGACCaagaaatttgttaatttgatcCAGGAGGCTAAGGATGGTACCCTGGATCTCAATAGAACTGCTGAGATCTTGGAGGTCCAGAAAAGGAgaatatatgatattacaAATGTGCTTGAAGGAATAGGATTGATAGAAAAAACTTCGAAGAACCATATCCGGTGGAAGGGATATAACGAGCTGGGGGCAGGCGATCTGGATGATCAAGCTAGTAGACTAAAGGATGAAGTTGGAAATCTGTATGCTGAGGAATGCCAACTTGATGATTCTATAAGgAAAAAACAAGAGCTTCTAAGAACGTTAGAGGGAAAAAACTATCAAAAGTACCTTTTCTTGACCGAGGAAGATATTCTTAGCCTACCATGCTTTCAGAACCAAACACTTATTGCAATCAAGGCTCCCCAAGCTAGTTTTATTGAAGTTCCTGATCCTGATGAGGATAATGGATTCCAACAAAGGCAGTACAAAATGATTGTTAGAAGCACGACTGGACCAATAGATTTGTATCTCCTGAGTAAACAAAATGACAAGGATCAGGGTCCCAGTGTGAAGCAGGCTAAAATAAAAGATCCATCATGGGATGGCGAGCATTTCAGAATGGAGGATACAAGGTTACATTTAGAAAGCCAATATCTGAAAAACCCTTCTCTGACTTTTAGTTCAAAGGAGTCACAGGCACCTGGCATTCAAAAAATTACTCCTACAGATTTTGATATTGAGAATGACTACTGGTTTCAATCAGATTCTACTGTGAGCCTAACAGATCTGTGGGCAACCGAGCAGTGGATTCAGATGGATGAGCTCCTCCGAAATGATTATTCCAATGAGGGTTTGGAATTTGCTCAAACATA 1268 0.3975 MSSSEQDQRRSHELSQFQFQLLHSHSQFHHNPSFAPYSASPHTLSFLPSSPNQSPSQDARSALAKLALDQRYEIDNSKSQRSNSEISPSLKTEHGTSGKRHGKSKVARPAKPRTQGSNTEAPHFSVANNCRYDSSLGLLTKKFVNLIQEAKDGTLDLNRTAEILEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGYNELGAGDLDDQASRLKDEVGNLYAEECQLDDSIRKKQELLRTLEGKNYQKYLFLTEEDILSLPCFQNQTLIAIKAPQASFIEVPDPDEDNGFQQRQYKMIVRSTTGPIDLYLLSKQNDKDQGPSVKQAKIKDPSWDGEHFRMEDTRLHLESQYLKNPSLTFSSKESQAPGIQKITPTDFDIENDYWFQSDSTVSLTDLWATEQWIQMDELLRNDYSNEGLEFAQT 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00911 422 Pfam E2F transcription factor CC-MB domain 212 310 IPR032198 GO:0046983
Bva10g00911 422 Gene3D - 126 198 IPR036388 -
Bva10g00911 422 SUPERFAMILY E2F-DP heterodimerization region 208 312 IPR037241 -
Bva10g00911 422 Pfam E2F/DP family winged-helix DNA-binding domain 133 196 IPR003316 GO:0005667|GO:0006355
Bva10g00911 422 CDD E2F_DD 207 313 IPR032198 GO:0046983
Bva10g00911 422 SMART E2F_TDP_2 131 196 IPR003316 GO:0005667|GO:0006355
Bva10g00911 422 MobiDBLite consensus disorder prediction 79 93 - -
Bva10g00911 422 PANTHER TRANSCRIPTION FACTOR E2FC 6 398 - -
Bva10g00911 422 Gene3D - 203 313 - -
Bva10g00911 422 SUPERFAMILY "Winged helix" DNA-binding domain 131 194 IPR036390 -
Bva10g00911 422 MobiDBLite consensus disorder prediction 72 124 - -
Bva10g00911 422 PANTHER TRANSCRIPTION FACTOR E2F 6 398 IPR015633 GO:0000978|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00911 Bva-Chr10 6899752 6903950 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00911 99 397 E2F-DP Transcription Factor Family AT1G47870 54.000 1.63e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Bva10g00911 E2F_CC-MB 4.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00911 K06620 - cit:102625601 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00911 10 6899752 6903950 Bva10g00911 10 6899752 6903950 ECH