Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00874 ATGGCTCGAGGCAAGATCCAGATCAAGAGGATTGAGAACACGACCAACCGTCAAGTGACCTACTCTAAAAGACGAAACGGCCTCTTCAAGAAGGCGAATGAGCTCACCGTTCTCTGCGACGCCAGGGTTTCCATTATCATGTTCTCCAGCACCGGCAAGCTTCATGAGTTCATTAGCCCCTCTACCACgactAAGGAGTTCTTCGACCAGTACCAGAAGACCGTAGGAACTGATCTATGGAGTTCCCACTATGAGAATATGCAAGAGAGTTTGAAGAAGCTGAAAGAGGTGAACAGAAATCTGAACCGAGAGATTAGGCAGAGGATGGGAGATTGTTTGAACGATCTGAACATGGAGGATCTAAAGCTTCTCGAGGAAGAGATGGAACAAGCTGCAAAGGCTGTTCGTGAGAGTAAGTATAAGGCGATAACCCGTCAGATTGACACCCAAAGGAAgaagTATAATAACGAGAAGGAAGTGCACGGCAGACTCATTCGTGACttgGAAGCAAGAGCTGAGGATCCACGTTATGGATTGATAGATAATGGAGTTGGAGGAGGGGAATACGATTCTGTGATTGGGTTCTCCAACCTAGGCCCTCGCATGTTTGCCCTAAGCCTGCAGCCTGGCCATCCCCATAGTGGAACAGGAACAGGAACAGGCTCAGATCTCACAACTTACCCCTTACTGTTCTA 695 0.4734 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDARVSIIMFSSTGKLHEFISPSTTTKEFFDQYQKTVGTDLWSSHYENMQESLKKLKEVNRNLNREIRQRMGDCLNDLNMEDLKLLEEEMEQAAKAVRESKYKAITRQIDTQRKKYNNEKEVHGRLIRDLEARAEDPRYGLIDNGVGGGEYDSVIGFSNLGPRMFALSLQPGHPHSGTGTGTGSDLTTYPLLF 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00874 231 Coils Coil 84 111 - -
Bva10g00874 231 PANTHER APETALA3 1 228 - -
Bva10g00874 231 Coils Coil 114 141 - -
Bva10g00874 231 Pfam K-box region 81 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva10g00874 231 Coils Coil 151 171 - -
Bva10g00874 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bva10g00874 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva10g00874 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva10g00874 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva10g00874 231 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Bva10g00874 231 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva10g00874 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva10g00874 231 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva10g00874 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 228 - -
Bva10g00874 231 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Bva10g00874 231 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bva10g00874 231 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00874 Bva-Chr10 6689186 6691269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00874 1 230 MADS-box Gene Family AT3G54340 57.265 7.02e-95 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva10g00874 K-box 8.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00874 K09264 - gmx:547720 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00874 10 6689186 6691269 Bva10g00874 10 6689186 6691269 ECH