Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00859 ATGTCCAACAACATTACGGGTCAAAGTCAAAGCCATTTTGGGAACCAAGAATTTGATGCTTATGGATCTTGTATTAGAAGCAGTAATGCATTTCCTGAAGGCTTTGGAGTATTTCCCAGCATTCAATCAATAGGAGACAGAATGTCAAGATCAATGGACCTTGTGCAAGCCCCTGTGCTAGCAAAGGGCTCTGAGATCAGCCACACTAGACATCTGATGGATCTTCTTGGAGCAGCCAATGGAAACAATCACCAAACTCAATGTCTCTCACTTTCTTTAGGCTCTCACATGTTTGTCTCCTCTGAGGAATACAGGCAGCGACCCTTAAACCCAGGTCTCATGACCCCCAATTACTTCATATCTGGAGAAGAGACAAGAGAACCTTGTAATCCAGGAGTCGAACATTTAACCAGTGACTACTCTTTCACCGGCAGCAGTGCTTTTGCTTCATCTTCTACCTCTTTAAACCGTTCTGCTTCCACCTCTTATGGAACAGAATCTTTTGCTGCTATTATTGGGAACTCAAGATACTTAAAACCAGTGCAATCCCTTCTTGAAGAACTTGTTGATGTTGGTGGAAATGTGGCTGACagattcaatgaaaaatatgtgGGGAAGTTGTTCCATGGGAGTAGAACCGCAGCTAGGATACTCTCCGCCGAATTAAAAGTAGAGTTATGCAATAATGGGCATTTATTGGCTGAGAAACATGAACTTCAAGTCAAAGTTGCAAAGTTGATCGCCTTGTTGGATGAGGTGGAGGGTAGATACGAGAAATACTATCatcaaatggaagaaatagTATCCTCGTTTCAAATGATAGCAGGTCTAGGAGCTGCCAAGTGTTATACTGGTTTAGCACTTCAAGCCATGTCTCGGCATTTCTGTAGTTTGAGAAATGCCATAATGTCACAAATAAATATGGAGAAGAAAAGACTTTTGCAAGATTTACCTAAAATCAGTAGTGGATTATCACAACTAAGTTTATTTGATAGAGATATTAGACAAAGTCGATTGTCTCTTCAACAGCTTGGATTGATTCAGAGTCAGCGGCAAGTGTGGAGACCCATTAGAGGGTTGCCAGAAACTTCTGTAGCAATCCTTCGTTCATGGCTGTTCGAACACTTTCTCCACCCTTATCCTAATGATTCTGAAAAGTTAATGCTGGCATCCCAGACGGGTTTGACTAAAAACCAAGTCTCAAATTGGTTCATAAATGCTCGAGTACGGTTATGGAAACCAATGATAGAAGAGATGTACAAAGAAGAGTTTGGAGACTCTTCAGAAGACTCCAACCCACCAGCTAACAACCACATTGCGAGGGAAGATACAGCAGACACAGAACGAGTGGGGATCTGCAATACAGAGTA 1370 0.4109 MSNNITGQSQSHFGNQEFDAYGSCIRSSNAFPEGFGVFPSIQSIGDRMSRSMDLVQAPVLAKGSEISHTRHLMDLLGAANGNNHQTQCLSLSLGSHMFVSSEEYRQRPLNPGLMTPNYFISGEETREPCNPGVEHLTSDYSFTGSSAFASSSTSLNRSASTSYGTESFAAIIGNSRYLKPVQSLLEELVDVGGNVADRFNEKYVGKLFHGSRTAARILSAELKVELCNNGHLLAEKHELQVKVAKLIALLDEVEGRYEKYYHQMEEIVSSFQMIAGLGAAKCYTGLALQAMSRHFCSLRNAIMSQINMEKKRLLQDLPKISSGLSQLSLFDRDIRQSRLSLQQLGLIQSQRQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGDSSEDSNPPANNHIAREDTADTERVGICNTE 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00859 456 Coils Coil 236 256 - -
Bva10g00859 456 Pfam Homeobox KN domain 371 410 IPR008422 GO:0003677|GO:0006355
Bva10g00859 456 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 14 432 - -
Bva10g00859 456 SUPERFAMILY Homeodomain-like 360 422 IPR009057 -
Bva10g00859 456 SMART prehox3 166 304 IPR006563 -
Bva10g00859 456 SMART HOX_1 354 418 IPR001356 GO:0003677
Bva10g00859 456 Pfam Associated with HOX 172 303 IPR006563 -
Bva10g00859 456 MobiDBLite consensus disorder prediction 423 456 - -
Bva10g00859 456 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 14 432 - -
Bva10g00859 456 CDD homeodomain 354 415 IPR001356 GO:0003677
Bva10g00859 456 Gene3D - 348 429 - -
Bva10g00859 456 ProSiteProfiles 'Homeobox' domain profile. 373 414 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00859 Bva-Chr10 6595276 6598078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00859 84 429 Homeobox Transcription Factor Family AT1G19700 43.989 8.03e-84 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Bva10g00859 POX 3.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00859 - - gmx:100792161 618.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00859 10 6595276 6598078 Bva10g00859 10 6595276 6598078 ECH