Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00858 ATGATGAGCGGATGCCTCTACGGTTCAATTATTCGGCCATCGCCGGTAGTTCACGAACTTCATGTTCCATTCAGCACCGCCGTTCTGCACCAAGAGCTCGGAGTTGCGATCTCTGATAGCAATTCATCAGTGATTGAGACAACAGagcaaggaaaagaagaagaacgaGTCCGTGATATTTTTGATGGAGTTGTTCAGTCACAATCACAAGATAAAACTTCTAGTTCCTCTACTAGAgcgaaaaagaagaaagaagatgatgaCAGCTCTGATGACAGGTTCAAGCTTCGGAATGGAAGGGAGatttttgaagaaaacGCCTACTTAGTTGGTGTTGAGCGCAAAGGTGATATACAAGATTCTTTTGGTATTCAAGAATCCCTCAGTGAACTGAACCAGCTTGCTGATACTGCTGGACTTAAGGTTGTTGGTTCTACATACCAGAAGCTTTCTTCTCCAAACCCCCGGACATACATTGGATCTGGCAAGGTCTCGGAAATCAAGAGTGCAATTCATGCCTTGGGTGTTGAAACCGTCATCTTCGATGATGAGCTATCAGCTGGGCAATTGCGCAACTTGGAAAAGATTTTTGGTGGAGATGTGAGAGTCTGTGACCGCACTGCTCTCATCCTTGATATATTCAACCAGCGAGCGGCAACGCATGAAGCATCTTTACAgGTGGCACTGGCACAAATGGAATACCAATTACCTCGACTCACAAAAATGTGGACTCACCTTGAGCGTCAAGCTGGAGGAAAGGTGAAGGGAATGGGTGAAAAACAAATCGAAGTCGACAAGCGAATTTTGCGTAATCAAATTGGTGCCACTAGGAAAGAGTTAGAATCTGTTAGGCAACATCGAAAGCAATACCGTAATAGACGTTTCTCAGTACCCGTACCCGTAGTATCCTTGgtTGGATACACAAATGCTGGTAAGAGTACGCTTTTAAATCAGTTAACAGGAGCAGATGTTCTTGCCGAGGATAAATTGTTTGCAACATTAGATCCAACTACAAGGAGAGTGCAGatgaaaaatggaaaggaaTTTCTCCTAACAGACACTGTTGGTTTTATTCAGAAGTTACCAACTACACTGGTTGCTGCCTTCAGAGCAACGCTAGAGGAAATATCAGAGTCATCGCTTTTGGTGCATGTGGTTGATATAAGCCATCCCCTAGCTGAGAAACATATAGAAGCTGTGGACAAAGTTCTGTCGGAACTAGATGTGTTATTAATTCCAAGATTGATGGTCTGGAACAAGGTTGATAAGGCTAGTGATCCCCAGAAAATCAGGTTAGAAGctgagaaaagagaagatgtAGTATGTATATCAGCTTTAAATGGTGATGGCTTACCCGAATTCTGCAATGCAGTTCAGGAAAAGCTAAAGGACTCTATGGTGTGGGTGGAAGCTTTGCTCCCGTTTGAAAAAGGCGACCTTCTCAGTACCATACATCAGGTCGGAATGGTTGAGAAAACTgAATATACCGAGAAGGGAACATTCATCAAGGCACATGTTCCCCTGCGATTTGCAAGATTGCTTACACCCATGAGGCAACTCTGCGTATCATG 1571 0.4137 MMSGCLYGSIIRPSPVVHELHVPFSTAVLHQELGVAISDSNSSVIETTEQGKEEERVRDIFDGVVQSQSQDKTSSSSTRAKKKKEDDDSSDDRFKLRNGREIFEENAYLVGVERKGDIQDSFGIQESLSELNQLADTAGLKVVGSTYQKLSSPNPRTYIGSGKVSEIKSAIHALGVETVIFDDELSAGQLRNLEKIFGGDVRVCDRTALILDIFNQRAATHEASLQVALAQMEYQLPRLTKMWTHLERQAGGKVKGMGEKQIEVDKRILRNQIGATRKELESVRQHRKQYRNRRFSVPVPVVSLVGYTNAGKSTLLNQLTGADVLAEDKLFATLDPTTRRVQMKNGKEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEKHIEAVDKVLSELDVLLIPRLMVWNKVDKASDPQKIRLEAEKREDVVCISALNGDGLPEFCNAVQEKLKDSMVWVEALLPFEKGDLLSTIHQVGMVEKTEYTEKGTFIKAHVPLRFARLLTPMRQLCVS 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00858 523 Gene3D - 299 467 IPR027417 -
Bva10g00858 523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 300 473 IPR027417 -
Bva10g00858 523 MobiDBLite consensus disorder prediction 63 93 - -
Bva10g00858 523 Gene3D - 218 285 - -
Bva10g00858 523 Pfam GTP-binding GTPase N-terminal 126 214 IPR025121 -
Bva10g00858 523 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 300 466 IPR030394 GO:0005525
Bva10g00858 523 PANTHER GTP-BINDING PROTEIN 6-RELATED 75 510 - -
Bva10g00858 523 TIGRFAM GTP_HflX: GTP-binding protein HflX 107 462 IPR016496 GO:0005525
Bva10g00858 523 CDD HflX 259 462 IPR030394 GO:0005525
Bva10g00858 523 Pfam HflX C-terminal domain 432 500 IPR045498 -
Bva10g00858 523 Pfam 50S ribosome-binding GTPase 302 420 IPR006073 GO:0005525
Bva10g00858 523 PRINTS GTP1/OBG GTP-binding protein family signature 369 387 IPR006073 GO:0005525
Bva10g00858 523 PRINTS GTP1/OBG GTP-binding protein family signature 302 322 IPR006073 GO:0005525
Bva10g00858 523 MobiDBLite consensus disorder prediction 76 93 - -
Bva10g00858 523 TIGRFAM small_GTP: small GTP-binding protein domain 301 454 IPR005225 GO:0005525
Bva10g00858 523 PANTHER GTP-BINDING PROTEIN HFLX 75 510 IPR016496 GO:0005525
Bva10g00858 523 Coils Coil 273 293 - -
Bva10g00858 523 Pfam GTP-binding GTPase Middle Region 217 294 IPR032305 -
Bva10g00858 523 Gene3D - 119 217 IPR042108 -
Bva10g00858 523 Hamap GTPase HflX [hflX]. 128 491 IPR016496 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00858 Bva-Chr10 6589710 6594945 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00858 K03665 - zju:107420493 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00858 10 6589710 6594945 Bva10g00858 10 6589710 6594945 ECH