Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00834 ATGTTCAGGAACCAGTACGACACCGACGTTACGACATGGAGCCCTGCCGGCAGGCTCTTCCAGGTAGAATATGCAATGGAGGCAGTTAAACAAGGTTCCGCCGCCATAGGGCTCCGATCTAAAACCCACGTGGTCCTGGCTTGCGTCAATAAGGCTAACTCGGAGCTCTCTTCTCACCAGAAGAAGATCTTCAAGGTCGATGACCACATCGGAGTTGCCATTGCTGGACTCACCGCCGATGGTCGAGTTCTCTCCCGCTATATGCGATCGGAGTGTATCAACTATAGCTATACGTACGAGTCGCCACTTCCCGTTGGTCGACTCGTCGTTCAACTCGCAGATAGGGCCCAGGTTTGCACCCAACGGTCTTGGAAACGCCCTTATGGCGTTGGTCTCCTGGTAGCTGGATTGGATGAATCTGGAGCTCACCTTTATTACAACTGCCCTAGCGGGAACTACTTTGAATATCAGGCTTTTGCAATTGGGTCTCGCTCACAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAGAACTTCACGAGCTCCTCAAGGGAAGACCTGATCAAGGATGCACTTATTGCAACCAGAGAAACCCTGCAAGGGGAAAAACTAAGGAGTTCCATATGTACGATTGCTGTCGTTGGAGTCGGTGAGCCGTTCCACATATTGGATCAAGAAACGGTACAGAAGTTAATTGATGCCTTCGAGATTGTGAGGGAGGAAGAAGTTCCAGCTGCTGAACCTCAGCCAGGTGCTGCTACAGATCAGGATTCTGCAGACCAGGGTGCTGCTGCTGCTCCAGACCAAGGTGTTGCTCCAATGGACATTTG 830 0.512 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADRAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFTSSSREDLIKDALIATRETLQGEKLRSSICTIAVVGVGEPFHILDQETVQKLIDAFEIVREEEVPAAEPQPGAATDQDSADQGAAAAPDQGVAPMDI 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00834 276 Pfam Proteasome subunit A N-terminal signature 6 28 IPR000426 GO:0006511|GO:0019773
Bva10g00834 276 PANTHER PROTEASOME SUBUNIT ALPHA TYPE 1 265 - -
Bva10g00834 276 MobiDBLite consensus disorder prediction 242 276 - -
Bva10g00834 276 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 1 265 - -
Bva10g00834 276 ProSiteProfiles Proteasome alpha-type subunit profile. 21 232 IPR023332 -
Bva10g00834 276 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 235 IPR029055 -
Bva10g00834 276 SMART Proteasome_A_N_2 6 28 IPR000426 GO:0006511|GO:0019773
Bva10g00834 276 ProSitePatterns Proteasome alpha-type subunits signature. 6 28 IPR000426 GO:0006511|GO:0019773
Bva10g00834 276 CDD proteasome_alpha_type_1 6 215 IPR035144 GO:0019773
Bva10g00834 276 Pfam Proteasome subunit 29 214 IPR001353 GO:0005839|GO:0051603
Bva10g00834 276 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 2 232 IPR029055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00834 Bva-Chr10 6475673 6478961 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00834 K02725 - rcu:8288956 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00834 10 6475673 6478961 Bva10g00834 10 6475673 6478961 ECH