Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00803 ATGAATGAGCTTGAGAATCCTTCGTCAGTGACCGTCTCAACAGCTTCTGGACCCGAAGCACTACTACCATTGAAAAAGAAGCGAAACCTCCCTGGAATGCCAGATCCAGATGCTGAGGTGATCGCTTTATCGCCGAAAACCCTGTTGGCGACGAACCGTTTCGTGTGCGAGATCTGCAATAAAGGGTTTCAGCGGGACCAGAACTTGCAGCTCCACCGACGAGGTCACAACCTTCCGTGGAAGCTCCGGCAGCGAACGACGCAGGAAATTCGCAAAAGAGTGTACGTGTGCCCTGAGCCTTCCTGCGTCCACCACAACCCTTCGAGGGCGCTTGGTGACCTCACCGGCATAAAGAAGCATTTCTGTAGAAAACACGGCgaaaagaaatggaagtgCGAGCGTTGCTCTAAGAAATATGCTGTACAGTCTGATTGGAAGGCCCATATGAAAACTTGCGGAACTAAAGAGTACAAATGCGACTGTGGCACCTTGTTCTCTAGGTTTCGGTTTCTATTCCCTCTTCTTTTAGTTTCCACTCAATCAAATGCCTCTTGGTTgctaattttgattattaatttgcGAAGGAGGGACAGCTTCATCATGCACCGACCTTTCTGTGAAGCTTTGGCGGAGGAGAGTGCAAGGACCCAAACACAAACGCAAACCCTAGCCGTTAGTGGCGGTTCTGACAGCATAGTTGGTGCGACTTCACCACTGCAGCCTCCACTTATTCCGTCTATCTCACTCGTCATTCAGAGCTCAGAAATTCCGGAAAACCCAGAGAAGCTGTCGCCGTCAACATGTTTAACGAACACAGTGACAAGCCGCACCACGTCCTGTTCAAGCAGTGTTTTTGCATCCTCAAACGCAGTGGCGACTACCCAGTCTTCGTCATTCTCTAATCTCAGACCCAGCTTAGCCCGTTCGGATTGTCCCACTACACTCTCATCGATCTCTGCCGTAGAACCcatatctctttctctctccacaTCACTCTATCTATCAACCAAGGACTCTTCTCTCTTTACGGACCAGCAAAAGCAAAACCCTCCCCAACATAGTGCGTCTCCACAACCAGCATTGTCTGCCACAGCATTGCTCCAAAAGGCAGCTCAAATGGGCGCCACGGCATCCAATGCATCGTTTCTTCGGGACTTAGGTCTAGCAACAGCATCTTCTTCGGGTACCGCTAAACACTGGAATAGCCATGTGAAGTTAGATAACAGTGTCCTTGGCCTTAGACTTGGCTCTGCTGGCAATGCGAGTTTTTCAGATATGCGATTTGCGAGCCAGCCCATGACTCGTGATCTTCTTGGTCTAAGCACAGGTGGTAGTGCTGGCGGGGCTACCAGGGGTGGTCTCTCTGCCTTGCATACTTCTTTTGGTGGTTCCTTCGACGTTGCAGATACATCGGAGGGAGAGAAGAGTTA 1430 0.4853 MNELENPSSVTVSTASGPEALLPLKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTQEIRKRVYVCPEPSCVHHNPSRALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTKEYKCDCGTLFSRFRFLFPLLLVSTQSNASWLLILIINLRRRDSFIMHRPFCEALAEESARTQTQTQTLAVSGGSDSIVGATSPLQPPLIPSISLVIQSSEIPENPEKLSPSTCLTNTVTSRTTSCSSSVFASSNAVATTQSSSFSNLRPSLARSDCPTTLSSISAVEPISLSLSTSLYLSTKDSSLFTDQQKQNPPQHSASPQPALSATALLQKAAQMGATASNASFLRDLGLATASSSGTAKHWNSHVKLDNSVLGLRLGSAGNASFSDMRFASQPMTRDLLGLSTGGSAGGATRGGLSALHTSFGGSFDVADTSEGEKS 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00803 476 SUPERFAMILY beta-beta-alpha zinc fingers 53 151 IPR036236 -
Bva10g00803 476 Pfam Zinc-finger of C2H2 type 54 76 - -
Bva10g00803 476 MobiDBLite consensus disorder prediction 1 20 - -
Bva10g00803 476 SMART c2h2final6 95 125 IPR013087 -
Bva10g00803 476 SMART c2h2final6 54 76 IPR013087 -
Bva10g00803 476 SMART c2h2final6 130 150 IPR013087 -
Bva10g00803 476 MobiDBLite consensus disorder prediction 1 16 - -
Bva10g00803 476 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 76 IPR013087 -
Bva10g00803 476 Gene3D Classic Zinc Finger 107 171 - -
Bva10g00803 476 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Bva10g00803 476 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 5 167 - -
Bva10g00803 476 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 194 470 - -
Bva10g00803 476 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 194 470 - -
Bva10g00803 476 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 167 - -
Bva10g00803 476 Gene3D Classic Zinc Finger 34 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00803 Bva-Chr10 6350493 6352452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00803 3 460 IDZ Gene Family AT5G66730 47.481 6.07e-125 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva10g00803 zf-met 0.0034 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00803 K25869 - jre:108995564 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00803 10 6350493 6352452 Bva10g00803 10 6350493 6352452 ECH