Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00785 ATGGCAAGTTGGTTTGGGGAATCAACAAGCAGGTCACCCCCAAGCGCTTTCTgctcaaataataataataacgatGCAGGAAATTTTGAATGCAACATTTGCTTTGATTTAGCACATGACCCAATAATTACTTTGTGTGGTCATCTCTTTTGCTGGCCCTGTCTTTACAAATGGCTTCACTTCCATTCACAATCACGAAAATGCCTGGTATGCAAAGCCCTCATTGAGGAGGAGAAGTTGGTTCCCCTATATGGGAGAGGAAAGACATCAACCGACCCAAGATCAAAGTCTATTCCTGGCGTCAATATCCCGCATCGTCCAGCTGGTCAGAGACCTGAAACtgctcctcctcctcctcccgAATCAAATCATTTTCCTCAACATGGGTTTGGATTTACGGGTGGATTTGCCCCAATGGCTACAGCAAGATTTGGGAATTTCACATTATCTGCTGCATTTGGTGGTTTGATTCCATCCTTATTTAACTTTCAATTCCATGGGTTTCACGATGCAAGCATGATTGGTGGAACAGCGGGTTATCCATATGGGTTTTCTAATTCATTTCATGGTGGCCATGTCCACGGATATCCTCCGCACACTGGCCAAGGGCAACAAGATTATTATCTGAAGCGGCTGCTTctgtttgttgttttctgtGTCGTTCTTGCTTTTATTTCGCAATA 683 0.4026 MASWFGESTSRSPPSAFCSNNNNNDAGNFECNICFDLAHDPIITLCGHLFCWPCLYKWLHFHSQSRKCLVCKALIEEEKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPPPESNHFPQHGFGFTGGFAPMATARFGNFTLSAAFGGLIPSLFNFQFHGFHDASMIGGTAGYPYGFSNSFHGGHVHGYPPHTGQGQQDYYLKRLLLFVVFCVVLAFISQ 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00785 227 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 225 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bva10g00785 227 MobiDBLite consensus disorder prediction 86 124 - -
Bva10g00785 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 85 IPR013083 -
Bva10g00785 227 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Bva10g00785 227 MobiDBLite consensus disorder prediction 110 124 - -
Bva10g00785 227 Pfam Zinc finger, C3HC4 type (RING finger) 29 76 - -
Bva10g00785 227 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Bva10g00785 227 PANTHER OS12G0636000 PROTEIN 2 225 - -
Bva10g00785 227 CDD RING-HC_AtRMA_like 29 73 - -
Bva10g00785 227 SUPERFAMILY RING/U-box 28 84 - -
Bva10g00785 227 SMART ring_2 31 71 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00785 Bva-Chr10 6267187 6268623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00785 29 210 C3H Transcription Factor Family AT1G19310 68.205 1.14e-87 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00785 K10666 - gmx:100527488 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00785 10 6267187 6268623 Bva10g00785 10 6267187 6268623 ECH