Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00768 ATGGGGGAATCATGCCAAAGTTGCAACAGATCATGGGCAGAAGAGATATACTGGAATCATTTccagttcgtccgttttgctCAGTTTCTCCCTACTGGTTATGATCAAAAACTTGCACTTCCGAGAAGGTTTTCAGATAGTTTGAAAAAGAAGTTGCCGGGTAAAGTGACTATCAGGGGTCCTGGCGGTGCTGTTTGGAGTATAGGTTTGACAACTAGAGACGACACCCTATTCTTCACGCATGGTTGGCAACAATTTGTTAAAGATCACAAATTGGAAGAGAATGATTTGCTGGTCTTTAAATTCAACGGTGAATCACAGTTTGATGTTCTGATCTTTGATCGGGAGAGCTTCTGTGAGAAGGTAGCTTCTTATTTTGTTCGAAAATGTGAGCATACAGAACgtgcaaatgaaaatttgaatgcGAGAAAAGAGACATATTTGGAAGAGGTTTACACCCCTTGTAATGCTGGTGTTGAATGTGCTTCACCTCAGAAGTCTATGGATGGTGACAGTACCAGAGTGCCAGCGGTTGTCCCCTGTGAAACTACTagtaaaatgatttataatattataaatgaatgTGCCACACCTCAGGAAACTATAAATGAAGATATGGATGGTGATGTTAATGGAGACCCAGATTTTACCCCTTCCCAAACTGACAGTAAAAGGATCCGGAAGCTAGTTTCTGCTGTTAAGCATGTCCAGACTAAGCGGAGAGGAAGACCACCCAAAGCGTCTGCTGCCAGATCTGCTGGAATAGTTAACTGGGTAGCTGGTGCTGAACCTTCATCTTTGGGTAAAAGTGGCACCTTTGAAGCTTATATTTCCAAAAGAAGGCCTGTAACCGAAGATGAGAAGGACAAGGTGCTTCAGTTGGCTGAAGTTGCGTGTACCCATGACAGCTTCTACCTAGTGATGCGACCCTCACATGTATACAGGAAATTCTATTTGACAATTCCCACAAGAATGGCGGCAGAACTTCTTCCCCCACAAAATCAAGATGTGATATTACGCACTGGAAATAGTGAATGGATTGCCAGATATACCTTCGTCCAAAATCGTGGTACGGGAGGACTTGCTGGGGGTTGGAAACATTTTGCTTTGGATAATAACCTGGAAGAATTTGATGTCTGTGTGTTTAAACCATCAGGTAAAAGCGAAAAGTACAACGCCTTGATCATGGACGTGAGTATATTCAGGGTTGTTCATGAGGTTACTCCTCTGGAAATGGATCCTGGCTCAAAACAGGTTCGTAGGAGGATGAACAAGGCCATCCACATTTG 1289 0.4127 MGESCQSCNRSWAEEIYWNHFQFVRFAQFLPTGYDQKLALPRRFSDSLKKKLPGKVTIRGPGGAVWSIGLTTRDDTLFFTHGWQQFVKDHKLEENDLLVFKFNGESQFDVLIFDRESFCEKVASYFVRKCEHTERANENLNARKETYLEEVYTPCNAGVECASPQKSMDGDSTRVPAVVPCETTSKMIYNIINECATPQETINEDMDGDVNGDPDFTPSQTDSKRIRKLVSAVKHVQTKRRGRPPKASAARSAGIVNWVAGAEPSSLGKSGTFEAYISKRRPVTEDEKDKVLQLAEVACTHDSFYLVMRPSHVYRKFYLTIPTRMAAELLPPQNQDVILRTGNSEWIARYTFVQNRGTGGLAGGWKHFALDNNLEEFDVCVFKPSGKSEKYNALIMDVSIFRVVHEVTPLEMDPGSKQVRRRMNKAIHI 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00768 429 Pfam B3 DNA binding domain 35 115 IPR003340 GO:0003677
Bva10g00768 429 Pfam B3 DNA binding domain 304 392 IPR003340 GO:0003677
Bva10g00768 429 SMART B3_2 304 399 IPR003340 GO:0003677
Bva10g00768 429 SMART B3_2 26 116 IPR003340 GO:0003677
Bva10g00768 429 ProSiteProfiles B3 DNA-binding domain profile. 304 399 IPR003340 GO:0003677
Bva10g00768 429 CDD B3_DNA 303 402 IPR003340 GO:0003677
Bva10g00768 429 CDD B3_DNA 37 114 IPR003340 GO:0003677
Bva10g00768 429 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 276 409 IPR044837 -
Bva10g00768 429 Coils Coil 130 150 - -
Bva10g00768 429 ProSiteProfiles B3 DNA-binding domain profile. 23 116 IPR003340 GO:0003677
Bva10g00768 429 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 4 167 IPR044837 -
Bva10g00768 429 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 276 409 - -
Bva10g00768 429 Gene3D - 19 119 IPR015300 -
Bva10g00768 429 SUPERFAMILY DNA-binding pseudobarrel domain 31 115 IPR015300 -
Bva10g00768 429 Gene3D - 282 406 IPR015300 -
Bva10g00768 429 SUPERFAMILY DNA-binding pseudobarrel domain 303 390 IPR015300 -
Bva10g00768 429 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 4 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00768 Bva-Chr10 6189910 6192576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00768 1 402 REM Transcription Factor Family AT4G33280 33.333 7.03e-68 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva10g00768 B3 8.4e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00768 - - gmx:100777709 434.876