Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00671 ATGTACAGGACATACAGAATGCCACCACCTCCATCTCTCCGATGTCAACACACTTGGGCTCTCCTCCTGGCTCCTCTTACTATTTGGATATGTGTTTCCACGGGTATCCGATATAGGTATTACGGGGATTCTAGTCTGGTTCTTGGACCCAGTTCATCGCGTTTGATGAAACCTGAGTTGAGCTCTATAGCAAATTGGAGTTCCTCGAATTTCCTCGTTGTCGGAGCATACAGCAGCAAGGGATTTCCCCTGTGGTTAAACAAGGGCTCCACCATCCGTATGAGATGGGAAGCACATAGTAGAACCTTAAATCAGCTAGAAGGGGTTGTGATTAAAGGAGAAAGGAAGTTTGAAACGCTGCAGCCTAAACAAACACTGTCTTCTGATGCAGTTGCTATCAGTGAGCCTATAAATGGTAAAGAAGCAGAATATGTGATTGAAGAGGATGATAGATACCACATTGGGGTTCTAAACATGAATTCCAGGAGCACAATAATCACCGTGCAAGTCAACGTTTCTGCCATGGTATATGATACCACCAGAGCCAAGAAGATGTGCTCAACTGCGAAGGGATCCTGCAGGCTCAGTCTTCTCTTCCCTCAAACacattacatcattctatctGCACCTAACAACGGAGGTCTTGGCGGATGGTTCGTTCAAGTTTCTTTCATGGCTCGCCTGTTAGCCTACCTAGCACTTTTAGGGTTTGTTGTGATTGTTATCTGTCTGATACTAAAATATCTCGGAGCCTGTGATAGGGATAATCAAATTCATAGTACCACCGTAACAGTAGACACATATAGTAGAACAAGTCGTGTAGATGTAGTACCAGCACGAGAGGCAACTGAAACTGAACCTATGATGCAAGCGAAGTCAAGTCGAATGACCTATGGAACAAATGAAGAAGATGACGATGATGAATCAGGAGGATCTAGTATCTCTTCAGAAGATTTATATGATGAAAAATTATGCGTCATTTGTTACGATGAACAACGGAACTGCTTCTTTGTTCCCTGTGGCCATTGTGCCATTTGCTATGACTGTGCAAAGAGGATTATGGAGGTGGAGAGCAAAGTTTGTCCGATATGCCGAAGGCTTATTCACAAATTCCGAAACGAACGTTTGACGTTTCAGTCTCCAATTGGATATGTCATAGGGGATCGCGGCATAGTTCAGTTGATGACTTGCGATTTGGGCCCACCTGATGTTATAAATAGACAAAGGggcaataaagaaagaccgGCAAGACAAGAGGAGGCGAGGTCCACCTGGGAGTGGCAAGAAGGCCACTGGGTGTTGCCAATGGCAACTTGCTTGTTTCTCATACTCATAGTATTCGTTTTACTGATCTCAAAGTTGTTCCTGAAAAGACAGGGCAACCATCCACCAAGTCCGCCTAGCTTACCAGTCATAGGTCATCTTTATCTTCTTAAGGAACCCCTCCACCGTAGTCTTCATAAGCTTGCCGAGAAGTACGGCCCCATAATCTTTCTCCGATTTGGCGCTCGTAATGTCCTTGTTGTTTCCTCACCCGCCGGAGTCGAAGAGTGCTTTATGAAAAACGACATTACTTTCGCGGATCGGCCGCTTACGCTTGCAGGCAAGCATCTGAATTACAATAGCAAGACGGTTGGATTCTTGTCGTATGGGGATCACTGGCGCAAGCTCCGCCGCCTCACCACACTAGAGCTGTTCTCCGTTAACAGCCTTGCCGTGTTTACGGGTATTCGTGAGGACGAGGTTAGACTGTTGGTAAAGCATCTGTTTCAAGATTGCTGCGGCGGAGGAGTAAGAGTAGAAATGGTAGAGATAGATCTCAGAGAGAGATTTGTGGAGCTTTCTTTCAATATCATGCTGAGGATGATCTCAGGGAAGCGGTATTACGGCAAGGATGTGGTTGCACAAGAAGCCAAGGAATTCCAGATTCTTATTAAGGAGTACGCCGAACTTCTGGGGAGTGGAAACTTGAATGACTTCTTGCCTTTATTACACTGGGTTGATTTTGGTGGAGTGGAGAAAAGGATGATGAAGTTGATGAACAAAATGAATAGATTCCTTCAGAACCTTCTCGACGAGCACAAGAGAAACTGGAGCATGAGTTTGAATGGAAGCAACATCCATAGCCAGAGGAAAATGACCTTGATTGAGGTTATGTTGCAGCTGCAAGAAACAGACCCAGAATTCTACACTGACGAAAATATCAAGGCAGTCATCCTCGCAATGCTGGTAGCTGGCTCTGAAACTTCGGCGACTACCATGGAATGGGCAATGTCTCTTCTCCTCAACCATCCAGAGTCACTCCAGAAGGCTAGGGCTGAGATAGATACTAATGTGGGACAGGAACAATTGGTGAAGGAATCGGACCTGCCAAAACTAAACTACTTGGAAAATGTGATCACCGAGACACTTCGGCTATTCCCTGTGGCTCCGCTTTTGCTACCCCACCAGTCTTCCAAGGATTGCACAGTTTGTGGTTTCAATATACCAGGAGGCACAATGTTATTTGTCAATCTATGGGCCATGCACAGGGATGCCAAGGTGTGGTTCGATCCAACAAGGTTTATGCCAGAGAGATACGAAGGTATTGAAGCCGAGGGTTACAAAATGATTCCATTTGGTGCTGGAAGGCGAGCTTGCCCAGGAGCTGGTTTGGCAAAACGAGTTATGGTTCAGGCACTGGGAGCACTAATTCAGAGCTTTGAGTGGAAGAAAATTGGACATGAACAAGTCAATATGATGGAGCGCACAGGGCTTACCACTCCAAAAGTTGAGCCCTTGGTTGCTTTATGTAAACCTCGCCAAGTCATGTTAAACATCCTGTCAAATCTGTG 2834 0.4513 MYRTYRMPPPPSLRCQHTWALLLAPLTIWICVSTGIRYRYYGDSSLVLGPSSSRLMKVSSLFVNQIEVKSDYANRVLLYSFNDKPELSSIANWSSSNFLVVGAYSSKGFPLWLNKGSTIRMRWEAHSRTLNQLEGVVIKGERKFETLQPKQTLSSDAVAISEPINGKEAEYVIEEDDRYHIGVLNMNSRSTIITVQVNVSAMVYDTTRAKKMCSTAKGSCRLSLLFPQTHYIILSAPNNGGLGGWFVQVSFMARLLAYLALLGFVVIVICLILKYLGACDRDNQIHSTTVTVDTYSRTSRVDVVPAREATETEPMMQAKSSRMTYGTNEEDDDDESGGSSISSEDLYDEKLCVICYDEQRNCFFVPCGHCAICYDCAKRIMEVESKVCPICRRLIHKVRRLFNS 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00671 404 SUPERFAMILY RING/U-box 342 398 - -
Bva10g00671 404 ProSiteProfiles Zinc finger RING-type profile. 352 392 IPR001841 -
Bva10g00671 404 SMART ring_2 352 391 IPR001841 -
Bva10g00671 404 Pfam Domain of unknown function (DUF4793) 169 271 IPR032010 -
Bva10g00671 404 PANTHER OS05G0521000 PROTEIN 12 403 IPR044586 GO:0004842
Bva10g00671 404 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 12 403 - -
Bva10g00671 404 Pfam Zinc finger, C3HC4 type (RING finger) 349 398 - -
Bva10g00671 404 MobiDBLite consensus disorder prediction 310 342 - -
Bva10g00671 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 326 403 IPR013083 -
Bva10g00671 404 Pfam Domain of unknown function (DUF4792) 78 144 IPR032008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00671 Bva-Chr10 5690015 5692133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00671 352 401 C3H Transcription Factor Family AT3G06140 40.000 2.56e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00671 - - qsu:112025660 493.812