Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00670 ATGGGGAGAGTGAAGCTTCAGATCAAGAGGATTGAGAACACAACAAATAGGCAAGTTACTTTCTCCAAGAGGAGGAATGGGCTCATCAAGAAAGCTTACGAACTTTCTGTTCTTTGCGATGTTGATGTGGCTCTAATCATGTTTTCCCCATCTGGGAGAGCAAGTCTCTTCTCTGGCTCCAAAAGCATTGAAGAAATTCTACAACGATATGTTAATCTTCCTCCGCAAGAACGTGGAAGTTTTCATCGTGCATGCGTGCAGTATATTCAAAAGGTGGTTAATAAGTTAAAAGCTGAAGCAGATCAAAGCTATCAAGTTCCTAGTCCAATGACTACAGACTCCCAGCTTGAGGACattcaaagagaaattttcatttgcaaAACTCAGTtggaagaaatggaaaagcGGCTGAGAATATTCGAAGGCGATCCTTCTGAAATCACGACATTGTGTGAGGCTGAATATCGCGAACACGTCCTTGGGGAAACTCTTAAACAAGTGCAGCTGCGAAGAGCACATCTTGCAAAAACTGTAGAAGCAAATGGATTTGCTGCCGGGAGCTCAAAGAACTTCACAGACTGGCTTCCCCATGGAGACCCGCAATCACAGATCCCAAACTTTGTGGATGTCAATGGCCTTGTATCTCTGAGGGATCAACAAGTGCATGCTGTTGCTGATATCTTATCTCCAACTTCGTCACTTCTTCACGCACACAACTTGGATGATCGAGATGGTCAAATGAGTCCAAGGAATGGCTTggaaaataacaataacaaagtAGAGCACCCTGAGTTTGCACAAGTCAATAATCTCAACTCCTCTCCTTGGGAGCAACTCCATCCCACAgGGGGTGGATCTTTCCCAGTTGCAGAGACAAGAGAAGGACAGCTACTTGACTGGTATTTTTCTCAGTACACACCACCAAACGTTCCTTA 935 0.4193 MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRASLFSGSKSIEEILQRYVNLPPQERGSFHRACVQYIQKVVNKLKAEADQSYQVPSPMTTDSQLEDIQREIFICKTQLEEMEKRLRIFEGDPSEITTLCEAEYREHVLGETLKQVQLRRAHLAKTVEANGFAAGSSKNFTDWLPHGDPQSQIPNFVDVNGLVSLRDQQVHAVADILSPTSSLLHAHNLDDRDGQMSPRNGLENNNNKVEHPEFAQVNNLNSSPWEQLHPTGGGSFPVAETREGQLLDWYFSQYTPPNVP 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00670 311 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Bva10g00670 311 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva10g00670 311 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva10g00670 311 Coils Coil 116 136 - -
Bva10g00670 311 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Bva10g00670 311 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Bva10g00670 311 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 ISOFORM X1 1 176 - -
Bva10g00670 311 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva10g00670 311 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva10g00670 311 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva10g00670 311 PANTHER SERUM RESPONSE FACTOR HOMOLOG 178 289 - -
Bva10g00670 311 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 ISOFORM X1 178 289 - -
Bva10g00670 311 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Bva10g00670 311 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00670 Bva-Chr10 5686420 5688561 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00670 1 196 Type I MADS-box Gene Family AT1G22130 47.442 1.03e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva10g00670 SRF-TF 1.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00670 - - mtr:MTR_3g102570 368.622