Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00654 ATGAGCTGCAACGGTTGCCGAGTCCTTCGAAAGGGTTGCAGCGAGACATGCTCTCTGAGGACGTGCCTGCAGTGGATCGAGTCCCCCGAAGCCCAAGGCCATGCCACTTTGTTCCTCGCTAAATTCTTTGGTCGTAGCGACCTAATGTCTTTCGTTTCCTCTGTTTCTGAAACCAAGAGACCAGcGTTGTTTCAGTCTCTCTTATTTGAAGCGTGCGGGCGAACGGTGAATCCCGTCAACGGTGCCGTAGGACTCTTGTGGAGTGGTAACTGGCACGTGTGCCTGGCTGCCTTGGAGACTGTCCTCTCCGGAGGTGTTCTCCGGCCGTTACCCGAGATCTTCGGCGGAGTTCTGACACCGGTATTGAACATATCTTCTGACACCGTCTGCAAGAATGCGTTTAACATAGGCAGAAGTGTTTACTCTGAATTCATCGGAGATATGAATCAGAAATTAGATTTCGATCTTTCGTTGATTCCGGAATCTTACGGCAATATTAACGCTGGGAGGGCGAAGATGACCAGACAGAGTGATCCAATGAACTCGTTGGTTTCTGGGGAATCGGAGACGTCGAGCTATGCCTACGGAAATGGTAGTTGCGGCGATGACCAGAAAAGGCTTTTAAATCTCTTCAACTG 638 0.5031 MSCNGCRVLRKGCSETCSLRTCLQWIESPEAQGHATLFLAKFFGRSDLMSFVSSVSETKRPALFQSLLFEACGRTVNPVNGAVGLLWSGNWHVCLAALETVLSGGVLRPLPEIFGGVLTPVLNISSDTVCKNAFNIGRSVYSEFIGDMNQKLDFDLSLIPESYGNINAGRAKMTRQSDPMNSLVSGESETSSYAYGNGSCGDDQKRLLNLFN 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00654 212 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Bva10g00654 212 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Bva10g00654 212 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 211 - -
Bva10g00654 212 PANTHER LOB DOMAIN-CONTAINING PROTEIN 39-LIKE 1 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00654 Bva-Chr10 5631738 5632725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00654 1 149 AS2 family AT3G49940 64.286 1.93e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Bva10g00654 LOB 3.8e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00654 10 5631738 5632725 Bva08g00534 08 2747519 2748830 ECH
Bva10g00654 10 5631738 5632725 Bva11g01793 11 15883429 15884687 ECH
Bva10g00654 10 5631738 5632725 Bva13g00376 13 1746990 1747662 ECH
Bva10g00654 10 5631738 5632725 Bva14g00468 14 2249345 2250082 ECH
Bva10g00654 10 5631738 5632725 Bva10g00654 10 5631738 5632725 ECH