Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00638 ATGAGGTTGAGACTCTTCATCGTCTCCGTATCTCAATGCAACGCACAAGACGAAGTTGCTTTGACTCTTGAGAGCTCTATGGCTTCTCAGCGTAGCCCTCAAGACAATGTTGTCTATGTTGAACCAGAATATTGCCCTCAAGCAGTGCTCGACTGGTATAGTCTCACTGGTGGAGACGACGAGTATAAGCGCCACACCCGTAATGCCATGGCCTCCTCTAGTAAGTCCACCTTGACCTTAAAAGCCAAAAAACATCTCTCTGCTTTGGGGTGGGTTTTCTGGTTGGcagacaaaaatggaagaaaggaATTGCGTTATAAATCACCCATCAATGGCAAGAATTATTATTCTCTGAAAACGGCATGCAAAAGCCTTATAGAAGAGGGAACAATATTAATAGGATCTGAGTCTGAAAGCATTACCCCCAATCACGAATCCCTGCCGCAAATTACTCCGGCTCCTCAAGATGAGGGCTTTTCgattaaaaaagtttcatCCTGTTCTGAAAACCACACTAATTTACAAGCACCTGCTATCACGCAGCAGCAAAGAAGAGGCAGGAAAAGAAAGGCAGAACCTTTATCAGGTAATGAATGTTCAATGGGTGGTCTATCACACTCACAAAACCAATTAAATGATTTGACTTGTGTTGGAGGTGGCAAAAGGGGTAGACATATGCGATCAAGTAAAAGAGTTAGGAGGTGGGTGTTTTCTTGGTTGATAGACCAGAAAGTGGTATTACCAAGAGCAAAAGTGTCCTGCCGTGGTAAAAATAATCAAGTGAAGGAAGGGAGGCTCTTTAGTCAGGGAATCGAGTGTGACTGTTGTTGGAAGATGTTCACACTCACTGGCTTTGAAGCTCATGCTGGTAGCACAAAACACAGACCCGCTGCCAGTATTTTCTTGGAAGATGGGAGGTTACTGTCGGATTGCCAGAAGGAAGCTTCGCAGAATAACAAAACGAAGGGCTTGAATACGAAAGCTAGGAGAAACGGTCTGatcaatgaaaatatgaaaacggTTCAGAATGATAGCATTTGTTCTGTTTGTCATAATGAGGGTGAATTAATTCTCTGTGATCGATGTCCATCCTCATTCCATCTAAGCTGCTTGGGTCTCAAGGAACTCCCTGATGGTGATTGGTTCTGCCCATCATGCTGCTGCAAAATTTGCAGCCACTACAGCTGCAAACATGTGAATGCAGATTCTGTGAATAATAGCTTTCTCGTTTGTGACCAATGTGAGCATAAATATCACATTGGGTGCCTCAAGATTAAAGGGCTTGCAGAGctgaatgaaattgaaaatgagaatTGGCTATGCAGCAGAGAGTGtgagaatatattttatggtCTACAGAAGCTGATAGGAAAACCGATTCCAGTGGCTGGACAAAATCTAAGTCTGACATTGTTGAAGACCATGAAGTCCCAAAGCTCTGCGGATGTTAATTGCGATCCCAATGCTTTGGCACTGATTGATAGCAAGCTCCGTGTGGCTCTTGAACTAATGCACGAGTGTTTTGAGCCAGTCATTGAAGCTTTCAACGGGAAAGATCTTGTTGAAGAGgttattttcagtaaaagtTCAGAACTTGGTCGTTTGAACTTTAAAGGGTTCTACACTGCGGTTCTGGAGAAGAACGATGAAGTGGTTACTGCTGCCACTGTGAGGATTTTTGGGCAGAAGGTTGCAGAAGTGCCTCTTGTGGCCACCAAGTTCGAGTTTCGAAGACTTGGAATGTGTAGTGCTTTGATGCGAGAGCTTGAGAAGAAGCTGATTGAGTTCGGTGTAGAGAGGTTAACTTTGCCTGCTGTTCATAGCATGCTTGAAACTTGGACAAGTTCGTTTGGCTTTGCAAAGATGACTGACCATGAGAGGTCACTTTTTCTCGATTATCCATTCTTGGTCTTCGGGGATACCATCATGTGCCAGAAGCTGTTGGAGAAACCTTCAATGGAAGAACGAACTGCTAAACCTAGTATTGATCTGCAACAGAACCATTTTATGTCGACCTCGGAAAGTTGCATCACTGAGATTTGTTACTA 2048 0.4189 MRLRLFIVSVSQCNAQDEVALTLESSMASQRSPQDNVVYVEPEYCPQAVLDWYSLTGGDDEYKRHTRNAMASSSKSTLTLKAKKHLSALGWVFWLADKNGRKELRYKSPINGKNYYSLKTACKSLIEEGTILIGSESESITPNHESLPQITPAPQDEGFSIKKVSSCSENHTNLQAPAITQQQRRGRKRKAEPLSGNECSMGGLSHSQNQLNDLTCVGGGKRGRHMRSSKRVRRWVFSWLIDQKVVLPRAKVSCRGKNNQVKEGRLFSQGIECDCCWKMFTLTGFEAHAGSTKHRPAASIFLEDGRLLSDCQKEASQNNKTKGLNTKARRNGLINENMKTVQNDSICSVCHNEGELILCDRCPSSFHLSCLGLKELPDGDWFCPSCCCKICSHYSCKHVNADSVNNSFLVCDQCEHKYHIGCLKIKGLAELNEIENENWLCSRECENIFYGLQKLIGKPIPVAGQNLSLTLLKTMKSQSSADVNCDPNALALIDSKLRVALELMHECFEPVIEAFNGKDLVEEVIFSKSSELGRLNFKGFYTAVLEKNDEVVTAATVRIFGQKVAEVPLVATKFEFRRLGMCSALMRELEKKLIEFGVERLTLPAVHSMLETWTSSFGFAKMTDHERSLFLDYPFLVFGDTIMCQKLLEKPSMEERTAKPSIDLQQNHFMSTSESCITEICY 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00638 682 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 541 630 IPR016181 -
Bva10g00638 682 PANTHER DUF724 DOMAIN-CONTAINING PROTEIN 4-RELATED 32 652 - -
Bva10g00638 682 SUPERFAMILY FYVE/PHD zinc finger 396 444 IPR011011 -
Bva10g00638 682 Gene3D - 502 630 - -
Bva10g00638 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 387 IPR013083 -
Bva10g00638 682 Pfam Acetyltransferase (GNAT) family 529 619 IPR000182 GO:0016407
Bva10g00638 682 ProSiteProfiles Zinc finger PHD-type profile. 344 389 IPR019787 -
Bva10g00638 682 Pfam Tify domain binding domain 264 315 IPR032308 -
Bva10g00638 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 388 448 IPR013083 -
Bva10g00638 682 SMART PHD_3 346 387 IPR001965 -
Bva10g00638 682 SMART PHD_3 388 445 IPR001965 -
Bva10g00638 682 Pfam PHD-finger 346 388 IPR019787 -
Bva10g00638 682 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 487 640 IPR000182 GO:0016407
Bva10g00638 682 MobiDBLite consensus disorder prediction 172 202 - -
Bva10g00638 682 CDD NAT_SF 544 603 - -
Bva10g00638 682 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 32 652 - -
Bva10g00638 682 SUPERFAMILY FYVE/PHD zinc finger 340 388 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00638 Bva-Chr10 5553038 5555086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00638 78 591 PHD Transcription Factor Family AT5G58610 36.068 4.79e-106 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva10g00638 Acetyltransf_1 0.0003 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00638 - - dzi:111303744 561.222