Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00628 ATGGAGGACGCATATGCCAGATCTATTAACGAGATCCTTGATTTCTTTGGAGTGGACCCAACAAAAGGTCTTTCTGATATTCAGGTGGCACAACATGCTAGACTTTATGGTGCAAACGTGCTGCCCGTTGAGAGAAGGGCTCCTTTTTGGAAATTGGTCTTGAAACAATTTGATGATTTGCTTGTAAAGATACTAATTGTAGCTGCAATTATATCTTTCATTCTGGCTTTAATTAATGGAGAAACAGGCTTAATGGCATTTCTGGAGCCTTCAgttattttattgatactGGCTGCAAATGCAGCTGTGGGGGTGATTACAGAAACAAATGCTGAAAAAGCTCTTGAGGAGCTACGTGCCTATCAAGCTGATGTTGCAACTGTGCTGCGAAATGGTTGTTTTTCCATCCTCCCGGCAACTGAACTTGTTCCTGGTGACATTGTGGAAGTTTCTGtcGGGTGCAAAATTCCAGCTGATATGAGGATGATCGAAATGCTAAGTAATGAAGTGCGGGTTGATCAAGCAATTCTTACTGGTGAAAGCTGCTCTGTGGAAAAAGAACTTAACACTACTACAGCAACAAATGCTGTATACcaagacaaaacaaatattttattctcgGGAACGGTTGTTGTTGCTGGTAGGGCAAGAGCTGTTGTGGTGGGAGTTGGTCCTAACACTGCCATGGGCAGCATACGGGATTCAATGATGCAAACAGAAGATGAGGCGACACcgttgaagaagaagctggACGAATTCGGTACTTTTCTAGCCAAGGTTATTGCAGGGATTTGCATGTTGGTGTGGATTGTAAATATTGGTCACTTCCGCGACCCTTCACATGGTGGTTTCTTGCGTGGTgcaattcattattttaagATTGCAGTTGCTTTGGCTGTTGCAGCAATTCCTGAAGGGCTCCCTGCTGTTGTTACAACGTGTTTGGCTCTTGGAACAAAGCGCATGGCTAGGTTGAATGCCATTGTTCGATCTTTGCCATCTGTCGAGACCTTGGGCTGTACTACTGTGATTTGCAGTGACAAAACTGGAACTTTGACGACCAATATGATGTCTGTGGCAAAGGTATGTGTGGTTCACTCCACACAACGTAGTCCCATAGTTACTGAATATGGTGTAAGTGGAACAACATACGCACCTGACGGCGTAATCTTTGACAGTACAGGGTCGCAGCTTGAGTTTCCAGCTCAGATGCCATGTCTTCTTCACATAGCAATGTGTTCTGCACTTTGTAATGAATCTTCCCTGCAATATAATCCTGACAAAGGAAAGTATGAAAAAATTGGAGAGTCAACTGAAGTGGCACTTCGGGTCCTGGCAGAAAAGattggTCTCCCTGGTTTTGACATGCCATCAGCCTTCAATATGTTGAGCAAGCATGAACGTGCATCTTACTGTAATCGTTATTGGGAGGAACAATTTAGAAAGCTAGATGTTTTGGAATTTTCTCGGGATCGTAAAATGATGAGTGTCCTTTGCAGCCGAAGTCAATTGCATGTTTTGTTCTCGAAGGGTGCTCCGGAGAGTATCATGTCTAGATGTACAACCATCCTGTGCAATGATGACGGTTCCATTGTGCCAATAACTGCTGACATTCGAGCAGAGATGGACTTGAGATTTAACAGTTTTGCAGGAAAAGAAACATTGAGATGCCTAGCTTTAGCCTTGAAATGGATGCCCCCAGGTCAACAAAATCTTGCCTTTGATGATGAGAAAGATCTTACATTTATTGGGTTGGTTGGGATGCTTGATCCACCAAGGGATGAAGTGAGAAATGCCATGCTTTCGTGCATGACTGCCGGCATTCGTGTTATAGTTGTCACTGGGGATAACAAGTTGACAGCGGAGTCACTCTGCCGCAAGATAGGAGCTTTTGATCACTTGATAGAATTTTCTGGACGTTCATACACTGCTTCTGAGTTTGAAGAACTTCCACCCCTGCAACAAACTGTAGCACTGCAGCAGATGGCACTTTTTACCAGGGTTGAGCCTTCCCATAAAAGGATGCTGGTTGAGGCATTACAAAACCAGAATGAAGTGGTTGCAATGACTGGTGATGGTGTCAATGATGCTCCTGCACTGAAAAAGGCAGATATTGGAATTGCCATGGGTTCTGGGACAGCTGTTGCCAAGAGTGCTGCAGACATGGTTCTGGCCGATGACAATTTTGCTTCAATTGTTGCAGCTGTAGCTGAGGGAAGGGCCATATACAACAACACAAAGCAGTTTATTAGATACATGATCTCTTCAAATATTGGTGAAGTGGTCTGTATATTTGTGGCTGCTGTGCTTGGAATACCTGACACCCTTGCTCCTGTCCAGCTTCTTTGGGTTAATTTGGTTACTGACGGATTGCCTGCTACTGCTATTGGCTTTAATAAGCAAGATTCTGATGTTATGAAGGCTAAACCTCGCAAGGTGAATGAAGCAGTTGTTACAGGGTGGCTGTTTTTTCGTTATCTAGTAATTGGAGCTTATGTTGGCCTTGCCACTGTTGCAGGCTTTATTTGGTGGTTTGTTTACTCTGATAGTGGCCCTAAACTACCATATACTGAGCTCATGAATTTCGATACATGCCCAACAAGGGAGACAACTTATCCTTGCAGTATTTTTGATGATCGACATCCATCCACTGTATCGATGACTGTGCTTGTCGTTGTTGAGATGTTCAATGCTTTGAACAATCTTAGTGAGAATCAATCTCTTCTGGTTATCCCTCCCTGGAGTAACGTATGGCTTGTTGGTTCTATAATTCTAACTATGCTTCTTCACATACTAATTTTGTATGTACACCCTCTCTCGGTTCTTTTCTCTgTAACAGCATTATCCTGGTCTGACTGGATGGTTGTCCTCTATCTTTCGCTGCCTGTTGTACTCATTGATGAGGTGTTAAAATTCTTCTCCAGAAATCCCATTGGTCGAAGGTTCAGATTATGGTTGAGGAGGCCTGAATTACTGCCTAAAAGAGAAGTGCGTGATAAGTA 3002 0.4244 MEDAYARSINEILDFFGVDPTKGLSDIQVAQHARLYGANVLPVERRAPFWKLVLKQFDDLLVKILIVAAIISFILALINGETGLMAFLEPSVILLILAANAAVGVITETNAEKALEELRAYQADVATVLRNGCFSILPATELVPGDIVEVSVGCKIPADMRMIEMLSNEVRVDQAILTGESCSVEKELNTTTATNAVYQDKTNILFSGTVVVAGRARAVVVGVGPNTAMGSIRDSMMQTEDEATPLKKKLDEFGTFLAKVIAGICMLVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKVCVVHSTQRSPIVTEYGVSGTTYAPDGVIFDSTGSQLEFPAQMPCLLHIAMCSALCNESSLQYNPDKGKYEKIGESTEVALRVLAEKIGLPGFDMPSAFNMLSKHERASYCNRYWEEQFRKLDVLEFSRDRKMMSVLCSRSQLHVLFSKGAPESIMSRCTTILCNDDGSIVPITADIRAEMDLRFNSFAGKETLRCLALALKWMPPGQQNLAFDDEKDLTFIGLVGMLDPPRDEVRNAMLSCMTAGIRVIVVTGDNKLTAESLCRKIGAFDHLIEFSGRSYTASEFEELPPLQQTVALQQMALFTRVEPSHKRMLVEALQNQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSAADMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKAKPRKVNEAVVTGWLFFRYLVIGAYVGLATVAGFIWWFVYSDSGPKLPYTELMNFDTCPTRETTYPCSIFDDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVIPPWSNVWLVGSIILTMLLHILILYVHPLSVLFSVTALSWSDWMVVLYLSLPVVLIDEVLKFFSRNPIGRRFRLWLRRPELLPKREVRDK 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00628 1000 Pfam E1-E2 ATPase 122 324 - -
Bva10g00628 1000 PRINTS H+-transporting ATPase (proton pump) signature 721 746 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bva10g00628 1000 PRINTS H+-transporting ATPase (proton pump) signature 690 706 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bva10g00628 1000 PRINTS H+-transporting ATPase (proton pump) signature 662 678 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bva10g00628 1000 Pfam Cation transporting ATPase, C-terminus 774 973 IPR006068 -
Bva10g00628 1000 PANTHER SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 3 3 979 - -
Bva10g00628 1000 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 976 IPR023298 -
Bva10g00628 1000 SUPERFAMILY HAD-like 577 738 IPR036412 -
Bva10g00628 1000 Pfam haloacid dehalogenase-like hydrolase 583 704 - -
Bva10g00628 1000 Coils Coil 111 131 - -
Bva10g00628 1000 SFLD C1.7: P-type atpase like 326 742 - -
Bva10g00628 1000 SMART Cation_ATPase_N_a_2 3 77 IPR004014 -
Bva10g00628 1000 Gene3D - 55 975 - -
Bva10g00628 1000 CDD P-type_ATPase_SERCA 5 975 - -
Bva10g00628 1000 ProSitePatterns E1-E2 ATPases phosphorylation site. 347 353 IPR018303 -
Bva10g00628 1000 Gene3D - 342 734 IPR023214 -
Bva10g00628 1000 PANTHER CALCIUM-TRANSPORTING ATPASE 3 979 - -
Bva10g00628 1000 TIGRFAM ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type 53 845 IPR005782 GO:0005388|GO:0006816|GO:0016021
Bva10g00628 1000 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 352 588 IPR023299 GO:0000166
Bva10g00628 1000 SFLD p-type atpase 326 742 IPR044492 -
Bva10g00628 1000 Pfam Cation transporter/ATPase, N-terminus 6 72 IPR004014 -
Bva10g00628 1000 Pfam Cation transport ATPase (P-type) 415 523 - -
Bva10g00628 1000 Gene3D - 22 237 - -
Bva10g00628 1000 PRINTS P-type cation-transporting ATPase superfamily signature 173 187 - -
Bva10g00628 1000 PRINTS P-type cation-transporting ATPase superfamily signature 584 595 - -
Bva10g00628 1000 PRINTS P-type cation-transporting ATPase superfamily signature 606 616 - -
Bva10g00628 1000 PRINTS P-type cation-transporting ATPase superfamily signature 345 359 - -
Bva10g00628 1000 PRINTS P-type cation-transporting ATPase superfamily signature 690 709 - -
Bva10g00628 1000 PRINTS P-type cation-transporting ATPase superfamily signature 713 725 - -
Bva10g00628 1000 SUPERFAMILY Calcium ATPase, transduction domain A 124 235 IPR008250 -
Bva10g00628 1000 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 92 372 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bva10g00628 1000 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 660 775 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bva10g00628 1000 Gene3D - 355 591 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00628 Bva-Chr10 5499047 5516192 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00628 1 1000 Primary Pumps ATPases(2) AT1G10130 83.616 0.0 1721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00628 K05853 - gmx:100783509 1798.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00628 10 5499047 5516192 Bva10g00628 10 5499047 5516192 ECH