Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00624 ATGCCTCTGTATCAGCCATCAAACGGGAGAAAAAACGGGGGTGCAAAACTTGATGCAGGCGGCGGCGCCGAGGTGCTTGATCTAGAAACAGCTGTTAAAGGCGGGGTTTTGGGTGGCGGGGAGGCGATAATTGGCGGCGGCTGCATCGCTGACAAATTGGATCTCAAGGTGTTGATTGAGGAGCTCGAGTCAATTGATGTGCCTTCAGTGTTTATTTGTCCAATCTCGCTGGAGCCAATGCAAGAAGCGGTGACCCTTTGCACGGGACAGACTTATGACAGATCCAATATTCTGAAATGGTTCTCTCTGGGTCACAATACTTGTCCCACAACAATGCAGGAGCTTTGGGACGATTCAGTAACGCCCAACAAAACTCTGAATCAGTTAATTTATAGCTGGTTTTATCAGAAGTACCTGGCAATGAAGAAGAAGTTCGAAGACGTGCAAGGAAGAGCTTTGGAGCTCTTGGACACGCTCAAGAAGGTTAAGGGTCAAGCCAGAGTTCAGGCTCTTAAGGATCTCAGGCAAGTTGTCTCTGCCCATGCCTCCACAAGGAAGACAGTAACAGAAAACGGTGGACTTTCCTTGATTTCATCTTTATTGGGTCCTTTCACTTCGCACGCAGTTGGCTCTGAAGCAATTGGGATTCTCGTGAATTTGGATTTGAGTTCAGAATTGAGGGCCAATCTGATAAACCCCGCCAAGATATCATTGACAGTGGATATTATGAACGAGGGAACAATTCAGACGAAGTTAAATTGTGCGAAATTGATTGGGATGTTGCTGATGGAAGGAAATGATTCTGAGACAGAAATTTTCTCAAGCTTGAGTCTTTTGGTCGGGTTGTTGAGGTTAGTAAGAGATAAGAGACACCCAACTGCTGTAGTGTTCGCCGGACTCATATTACTCAAGACTATATGTTCTCAGGAATCAGTTAGAAGttcaattttaagaataagGGCAGTTCCTCAATTGATTGAGCTTTTGCCCTGTTTGAATAACGAGTGCTCAGAGATAGTCTTGTATATTCTAGAGGTATTGTCAACTATTCCAGAGGGAAGATTGGCTTTGAAAGAATGTCCAAACAGTATACCAAATGTGGTGAAGCTATTGATGAGAGTCTCAGAAAACTCCACTCAATTCGCTTTGACAATATTGTGGGCAATCTACAAGCTAGCCCCCGAAGAATGTGCTTCACAGGCAGTGGAGGCTGGCTTGGCGCCTAAGCTGCTACTCGTAATTCAGAGCGGTTGCAACCCGGTGTTGAAGCAGATGTCTGCTGAGCTTTTAAAATTGTGCAGTGTCAATTACTCTACTAGCATCTTGATTTCAAAGTGTATGCTCACCACAACGATACAATG 1361 0.446 MPLYQPSNGRKNGGAKLDAGGGAEVLDLETAVKGGVLGGGEAIIGGGCIADKLDLKVLIEELESIDVPSVFICPISLEPMQEAVTLCTGQTYDRSNILKWFSLGHNTCPTTMQELWDDSVTPNKTLNQLIYSWFYQKYLAMKKKFEDVQGRALELLDTLKKVKGQARVQALKDLRQVVSAHASTRKTVTENGGLSLISSLLGPFTSHAVGSEAIGILVNLDLSSELRANLINPAKISLTVDIMNEGTIQTKLNCAKLIGMLLMEGNDSETEIFSSLSLLVGLLRLVRDKRHPTAVVFAGLILLKTICSQESVRSSILRIRAVPQLIELLPCLNNECSEIVLYILEVLSTIPEGRLALKECPNSIPNVVKLLMRVSENSTQFALTILWAIYKLAPEECASQAVEAGLAPKLLLVIQSGCNPVLKQMSAELLKLCSVNYSTSILISKCMLTTTIQ 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00624 453 ProSiteProfiles U-box domain profile. 66 140 IPR003613 GO:0004842|GO:0016567
Bva10g00624 453 SMART Ubox_2 70 133 IPR003613 GO:0004842|GO:0016567
Bva10g00624 453 SUPERFAMILY RING/U-box 61 137 - -
Bva10g00624 453 CDD RING-Ubox_PUB 71 113 IPR045210 -
Bva10g00624 453 Gene3D - 145 445 IPR011989 -
Bva10g00624 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 144 IPR013083 -
Bva10g00624 453 PANTHER WDSAM1 PROTEIN 47 452 IPR045185 GO:0061630
Bva10g00624 453 SUPERFAMILY ARM repeat 156 436 IPR016024 -
Bva10g00624 453 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 47 452 - -
Bva10g00624 453 Pfam U-box domain 67 137 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00624 Bva-Chr10 5488578 5490117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00624 1 453 U-box Gene Family AT5G65920 60.879 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00624 - - jre:109007095 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00624 10 5488578 5490117 Bva10g00624 10 5488578 5490117 ECH