Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00614 ATGGATTCTGATCAAGCGAAGCTGTTTGTTGGTGGTATTTCTCGGGAGACAACCGAAGATATTCTAAGAGACCATTTCGCTAGGTACGGCTCTGTTGTTGGTTCCACGATTTCGCTAGACCGGAGCACTAGAAATCCTAGAGGTTTTGGCTTCGTTAGGTTCTCTGATCTTTCTGCAGCCGATAAAGCCCTTCAAGATACGCATGTTATATTGGGCAGAACGGTAGAAGTGAAAAAAGCAATACCGAGAAGCGAGCAGCAATACCAAAACCAACCACAGAGTAGAGGGACGAGTAACTGTTGTAGTAATGACAGTAGCAGTTACCAGATTAGGACTAAAAAGATTTTCGTAGGTGGCTTATCAGCTGGTATCTCTGAGGAAgagtttaagaaatattttgaaaggtTTGGTAGAATAACAGATGTAGTGGTGATGCAGGACAATATAACTCACCGTCCTAGGGGGTTTGGGTTTATCACTTTCGACTCAGAAGAATCTGTTGCAAATGTTATGTTGAAAACTTTTCATGACTTGAATGGTAGACAGGTGGAGGTTAAGAGGGCTGTTCCAAAAGAGGGGAACAATGGCAGTGATGGTGTTAACAAATTGAGGTTTAAGGCTGGAAGAGGAGCACCTAAAAGTTATCCTCACTATCCTGGGTATATGCTCCCTAGCTTTGCTCCTTTTCCCTGGTATAGTAATAATGGAGTATATTATTCTGGATTAAACATATATGGTTGTTGGTACCCTATGGGAGGGTATGGGGGAAATGGCTATGCAGTTCCATCTGGTGCCCCTAGGAACTTCTGGTATGGACCCATGATAACCAGTGCTCAGGCATGCCAGGCGCCTTATGTCCATGCTTCTTCTAGTCCTGCATATGTCGGTGGTAGGTTTGGAATAGTTGGTACTGTAACCGGGGGGCAAACTGGCGTTGTTGCATCTGCAgccaatttgaaatttgatcaaattttcGGTGTCAATGGATTTGCAAAAGGTGATATGACATCTCCTCCAATTGAAGTGGTAAAGCAGGGTATTGATTCTTTAAGTCTGAAGGGAAGTAATGATGAAGCTTCTTGTTA 1085 0.4194 MDSDQAKLFVGGISRETTEDILRDHFARYGSVVGSTISLDRSTRNPRGFGFVRFSDLSAADKALQDTHVILGRTVEVKKAIPRSEQQYQNQPQSRGTSNCCSNDSSSYQIRTKKIFVGGLSAGISEEEFKKYFERFGRITDVVVMQDNITHRPRGFGFITFDSEESVANVMLKTFHDLNGRQVEVKRAVPKEGNNGSDGVNKLRFKAGRGAPKSYPHYPGYMLPSFAPFPWYSNNGVYYSGLNIYGCWYPMGGYGGNGYAVPSGAPRNFWYGPMITSAQACQAPYVHASSSPAYVGGRFGIVGTVTGGQTGVVASAANLKFDQIFGVNGFAKGDMTSPPIEVVKQGIDSLSLKGSNDEASC 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00614 361 MobiDBLite consensus disorder prediction 82 103 - -
Bva10g00614 361 SUPERFAMILY RNA-binding domain, RBD 109 199 IPR035979 GO:0003676
Bva10g00614 361 MobiDBLite consensus disorder prediction 83 103 - -
Bva10g00614 361 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 337 - -
Bva10g00614 361 Gene3D - 4 85 IPR012677 -
Bva10g00614 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Bva10g00614 361 SUPERFAMILY RNA-binding domain, RBD 3 102 IPR035979 GO:0003676
Bva10g00614 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Bva10g00614 361 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 337 - -
Bva10g00614 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Bva10g00614 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 172 IPR000504 GO:0003723
Bva10g00614 361 SMART rrm1_1 114 186 IPR000504 GO:0003723
Bva10g00614 361 SMART rrm1_1 7 78 IPR000504 GO:0003723
Bva10g00614 361 Gene3D - 86 203 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00614 Bva-Chr10 5431639 5433387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00614 8 250 Eukaryotic Initiation Factors Gene Family AT2G36660 25.769 2.33e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00614 K14411 - gmx:100816822 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00614 10 5431639 5433387 Bva10g00614 10 5431639 5433387 ECH