Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00597 ATGATCGGAATAGCAGAATCAAAACGATTTGTCCCCAGCCTCCAAATTTCTCCTTGGGAGTGGGACCCGTTGGAAACTTTGATTTCTGCATCTCCATTCTCTATTAACTACAACGGAAATGCCGGTGCTGGCGATTATTCTCCTTCTTCGTCTGCTCTTCACGGTTTTCCTTCCAATGATTTCACCCCCATTGAGTTTGAGTTGGACGAAGAATTTGACATGCCCATTGATGCTTTTTCTAGCGATAATTTCCGCATGTTCGAGTTTAAGGTCCGCAAATGTGCACGTGGCAGGTCCCATGACTGGACGGAGTGCCCGTACGCCCATCCCGGCGAGAAGGCTCGCCGCAGGGATCCTCGGAAGTTTCACTATTCCGCCACCGTGTGTCCCGAGTTTCGCAAAGGGGACTGCAATAAAGGTGACTACTGCGAGTTTGCTCACGGAGTCTTCGAATCTTGGCTGCACCCAGCTCGTTACAGGACTCAGCTCTGCAAAGACGGAACAAATTGTCGCCGCCGAGTTTGTTTCTTTGCTCACACTTCGGAACAGCTACGGGTCCTGACTCACGGGTCGGTTGAATCATCGAATGGGTCACCGTTTCGCCATGCTGTTGATTCACTCCGTTCGACTAATGCTTCGGCCTTTGTTTCATCACCAACTTCGGTGCTTAACTCGTCACCGCTTTCTGACTCGCCACCCACACGGCCCACCTTCAGCAATGAATACGGCAACGTATCGTCCGAGGCGGTGAGTGAAATAGTTACCTCAATGCGTAATGTGCAAATTGATAACATGCCTGCTAGTGCCCGTAGTTCCCAACGTGGATCTGTGTTTGGTCAGACTATTCGACCCGGATTCTTCAGCCTTCCTTCCACTCCAACTGGAACTAGGGCAAAGAATAAATCATTGCTAGACCTCTGGGACCAGAGCGACAAAGAAGAGCCTGCAATGGAGAGGGTGGAATCGGGAAGAGACCTTAGAGCCAAGATATACGCCAAACTCAGTAAGGAGAACTCGTTTGGGCGAAACGACCCGGGGATTTCAGCCCCCGATTTTGGATGGATCTCTGAACTGGTAAAGTG 1082 0.5055 MIGIAESKRFVPSLQISPWEWDPLETLISASPFSINYNGNAGAGDYSPSSSALHGFPSNDFTPIEFELDEEFDMPIDAFSSDNFRMFEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKFHYSATVCPEFRKGDCNKGDYCEFAHGVFESWLHPARYRTQLCKDGTNCRRRVCFFAHTSEQLRVLTHGSVESSNGSPFRHAVDSLRSTNASAFVSSPTSVLNSSPLSDSPPTRPTFSNEYGNVSSEAVSEIVTSMRNVQIDNMPASARSSQRGSVFGQTIRPGFFSLPSTPTGTRAKNKSLLDLWDQSDKEEPAMERVESGRDLRAKIYAKLSKENSFGRNDPGISAPDFGWISELVK 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00597 360 MobiDBLite consensus disorder prediction 218 242 - -
Bva10g00597 360 ProSiteProfiles Zinc finger C3H1-type profile. 124 150 IPR000571 GO:0046872
Bva10g00597 360 SMART c3hfinal6 158 181 IPR000571 GO:0046872
Bva10g00597 360 SMART c3hfinal6 123 149 IPR000571 GO:0046872
Bva10g00597 360 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 127 148 IPR000571 GO:0046872
Bva10g00597 360 Gene3D - 121 186 - -
Bva10g00597 360 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 9 360 - -
Bva10g00597 360 PANTHER UNKEMPT FAMILY MEMBER 9 360 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00597 Bva-Chr10 5306759 5308216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00597 65 237 C2H2 Transcription Factor Family AT5G12850 54.054 2.76e-57 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva10g00597 zf-CCCH 2.1e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00597 - - zju:107420623 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00597 10 5306759 5308216 Bva10g00597 10 5306759 5308216 ECH
Bva10g00597 10 5306759 5308216 Bva06g02205 06 14462935 14464295 ECH