Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00575 ATGGAGAATGATATCTTCAATGCTTCAGTGGACATGGCTGGCAGAAATTTTTCTGTCATTGATCAAATTCCACAACATCAGACACCAAACCCACTTGTTCACTGCTATTCGTTTGACCTTAATGACCAAACCCGTATCCTAAATGGAATTTCGATGCTTGCTGGAGTGCAAAGTGAGCCTAGTAATAATGTCCATGCTGGTGTTCGTTTAATGAATCCTCCATGTATTACTGATCCTGATTCTAATTCCTTAGTTACACCACAAGGAAAGAATATTGTGGGTAATGCCTCACTTGGAACCTCAAGTCCCATAGAAAACAGTGATCTTCAGGAGCAATTAGCTGGTGTTACACCTATCAGTCCTGGTTCACTTGCTGCCATTCTTGCTGCTAGAATTGGTTTTCAAGAAAACTTTGAGAGATCAGCAGCTTTGTCTCCCTCAGTCTGTTCATTGGAGGCACTGGGACCatgtatattaaataattggcAGGATAGTTCAAACCCTTTGTTTGCAGCTTTTGGGGACCGTGGCTTCGATGAAGTACCTGTACTTATTAAGTGGAATGAGAGCAAATTTCCTAAACCTCCAGAGCTAAATGGAACTGGGTTCCAGCCTTATTCATCTATTGGAAACATGGACCCAAATGGATGGACATCATCATCAAATGGTGCAAACTTGACCAATCATCCTTAcaatttgtgtaattttagTAACGAGCTCTCATTGAGTCTTGCTACTTCTCCAAACGCAGGTCAGTGCTCGGACGTGAGTTGTTCTGATGTGACCCATTACTTTAGTGGAACAAGGTCTggtttggaccaaatctcttccaGCAGTAGAGAGCTTTCTTTGAGTTTGAATTCTAACAAACATGTGCAATTTTCACAAGCTATATTGGGTTCGAGATATCTTAATGGCATTCAAGAGATACTCGCTCAAATTGCAAGATATTCATTAGAAAATCTAGAGCCGATAAATAGTTCAGCTGCAGGATTTAGAGCAGGAGCAAGTGTATCAAACTCAGCTTTCCCACCCAAAAAGAGATCGGGAGCGATTGATCACAATGCAAATTCTATACTTGAATCTCATACTGAACCTACATTACAAAGACATGCAGCCGAATCAAAGAAAACCCAACTGCTAACGCTTTTACAACTGGTTGATAGCCGATATAATCAGTGTTTGGATGAGATACATACTGTTGTATCTGCATTTCATGCTGCCACAGAGTTGGACCCACACATACATGCACATTTCGCTCTGCAAACAATCTCTACCTTGTACAAGGACTTGAGAGAGAGGATTAGCAATTATATTCTTGCCACCGGAGCAAATTTCAACAACTCATGCtcagaagagagagaaatttcaGCTGAAACTTCATTCATCCAACAACAATGGGCTCTCCAgcagttgaaaagaaaagatcatCAATTATGGAGGCCGCAAAGGGGTTTGCCTGAAAGATCTGTCTCTGTTCTACGGGCTTGGATGTTTCAGAACTTCCTCCATCCGTATCCTAAAGATGCAGAGAAGCATTTACTTGCAGTGAAAAGTGGGTTGACGAGAAGCCAGGTATCTAACTGGTTTATAAATGCTCGTGTTCGGCTATGGAAGCCTATGATTGAGGAAATGTACGCGGAaatgaacaaaagaaagggatgtcgaaatgaagaaggaacAGAGAGCAGTCATAGAAGCCGGATAGGCATGAGCAATCAAAGATTTAATATCAATTG 1739 0.3859 MENDIFNASVDMAGRNFSVIDQIPQHQTPNPLVHCYSFDLNDQTRILNGISMLAGVQSEPSNNVHAGVRLMNPPCITDPDSNSLVTPQGKNIVGNASLGTSSPIENSDLQEQLAGVTPISPGSLAAILAARIGFQENFERSAALSPSVCSLEALGPCILNNWQDSSNPLFAAFGDRGFDEVPVLIKWNESKFPKPPELNGTGFQPYSSIGNMDPNGWTSSSNGANLTNHPYNLCNFSNELSLSLATSPNAGQCSDVSCSDVTHYFSGTRSGLDQISSSSRELSLSLNSNKHVQFSQAILGSRYLNGIQEILAQIARYSLENLEPINSSAAGFRAGASVSNSAFPPKKRSGAIDHNANSILESHTEPTLQRHAAESKKTQLLTLLQLVDSRYNQCLDEIHTVVSAFHAATELDPHIHAHFALQTISTLYKDLRERISNYILATGANFNNSCSEEREISAETSFIQQQWALQQLKRKDHQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNKRKGCRNEEGTESSHRSRIGMSNQRFNIN 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00575 579 PANTHER HOMEOBOX PROTEIN ATH1 10 576 - -
Bva10g00575 579 SUPERFAMILY Homeodomain-like 482 549 IPR009057 -
Bva10g00575 579 CDD homeodomain 480 541 IPR001356 GO:0003677
Bva10g00575 579 SMART prehox3 292 437 IPR006563 -
Bva10g00575 579 MobiDBLite consensus disorder prediction 554 579 - -
Bva10g00575 579 SMART HOX_1 480 544 IPR001356 GO:0003677
Bva10g00575 579 Gene3D - 483 561 - -
Bva10g00575 579 Pfam Homeobox KN domain 497 536 IPR008422 GO:0003677|GO:0006355
Bva10g00575 579 Pfam Associated with HOX 298 436 IPR006563 -
Bva10g00575 579 ProSiteProfiles 'Homeobox' domain profile. 477 540 IPR001356 GO:0003677
Bva10g00575 579 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 10 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00575 Bva-Chr10 5197775 5200769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00575 238 553 Homeobox Transcription Factor Family AT4G32980 56.329 1.56e-108 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Bva10g00575 POX 3.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00575 - - gmx:100820354 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00575 10 5197775 5200769 Bva06g02223 06 14561117 14563882 BWGD
Bva10g00575 10 5197775 5200769 Bva10g00575 10 5197775 5200769 ECH