Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00572 ATGGGCAAAAAATGCTCATATTGTGGAAATATGGGTCACAATTCTAGGACTTGCAACACTACTCAAAGTGAAAGAGGGGGATTAAAGCTCTTTGGAGTGCAACTtgaactttcttcttcttcatcaccTTTAAGCTTCGCACTGAAGAGAAGTTTCAGCATGGACTACCTGCCATCTTCGCGAACCTCCTTGTCTGCACCCTCATTCTCCTCATCAGCTTCTCGGTTTGCTGTGAATGAAACTTCGGACGGAATGTGTGATCGTCATGATTACTTATCATCCAATTATGGCATCATAGAAAGAacacaagaaaggaaaaaagGTGTGCCATGGACAGAGGAGGAACACCGAATATTTCTTATGGGTCTTGAGAAGCTAGGCAAGGGTGACTGGAGGGGCATCTCTAAGAATTTCGTGACTACAAAAACGCCAACCCAAGTGGCGAGTCATGCCCAAAAGTACTTTCTTCGACTGAAAGGcttcaataaaagaaagcGCCGTCCCAGCCTCCTTGATGCGGGAACAGAAAATTTGTCTCTTGAACCAAACAATACTACTTGCTTGTCTAAGCCAAGTGAAGCTTTTGGTCCATTTGGGTTTCCATCAGAGACAACTAGATTGACTTCAAATTATATCAGTTGCAGCAGCAAAAGGTTTCGTCTTTCGGAGTGGCTTTCTTGTTACCATTCACTGCTTAATTGGCCTACTTCTACCTCTTCAACTCTGACAAACTACACTCTTCAAAGCGCAGACCCTGATTTAGAACTCAAACTTGCAGCTCCAACGCCATTGGATGTTGGAGCCAAGACATCTACGGTCCGCAATCCTTCCAGCTTGACATATTTTTTAGCACACCAGAGTGGGAATAACACAAGAGTAGCTTA 884 0.414 MGKKCSYCGNMGHNSRTCNTTQSERGGLKLFGVQLELSSSSSPLSFALKRSFSMDYLPSSRTSLSAPSFSSSASRFAVNETSDGMCDRHDYLSSNYGIIERTQERKKGVPWTEEEHRIFLMGLEKLGKGDWRGISKNFVTTKTPTQVASHAQKYFLRLKGFNKRKRRPSLLDAGTENLSLEPNNTTCLSKPSEAFGPFGFPSETTRLTSNYISCSSKRFRLSEWLSCYHSLLNWPTSTSSTLTNYTLQSADPDLELKLAAPTPLDVGAKTSTVRNPSSLTYFLAHQSGNNTRVA 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00572 294 SMART sant 107 157 IPR001005 -
Bva10g00572 294 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 106 157 IPR006447 GO:0003677
Bva10g00572 294 CDD SANT 110 155 IPR001005 -
Bva10g00572 294 Pfam Myb-like DNA-binding domain 110 155 IPR001005 -
Bva10g00572 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 103 159 IPR017930 -
Bva10g00572 294 PANTHER TRANSCRIPTION FACTOR KUA1 1 270 - -
Bva10g00572 294 SUPERFAMILY Homeodomain-like 104 160 IPR009057 -
Bva10g00572 294 ProSiteProfiles SANT domain profile. 111 159 IPR017884 -
Bva10g00572 294 ProSiteProfiles Myb-like domain profile. 103 155 IPR001005 -
Bva10g00572 294 Gene3D - 109 161 - -
Bva10g00572 294 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE ISOFORM X1 1 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00572 Bva-Chr10 5184638 5186373 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva10g00572 Myb_DNA-binding 5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00572 - - zju:107420077 237.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00572 10 5184638 5186373 Bva10g00572 10 5184638 5186373 ECH
Bva10g00572 10 5184638 5186373 Bva06g02226 06 14573902 14574893 ECH