Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00564 ATGACTCCTGTTTCTCTGAACCGGCCACCACCTGCTAATTCTTCCTACCCTCTCATCGGTGATCAAATACACGATCAACCCCAACTCTTCATTTCACCAAATAATCGGCCTTCGTCCAGTACTCTTTCATATCATACTTTCTTCGATCAAGAGggttttgagGCTGTATTCCATGCTGCATCAAGCAATTATCAAGCTTATTCTACTTCAGATCAAGCCGCGGTTATGGATGAGCTGCTGATGAGCAATAGGACGAAGGATAAAGAAATTAGCAAAAGCAGCCATGGCTATGCTGAGTCTTCAAAGTGGATGCCTTCAAAGATGCGACTGATGAGAAAAATGATGACTACCCCAGATGCTGCAGAAAACAGCCAAAGAATTAGCCCCTCTAACACCACTAGGGTTTGTTCGGATTGTAACACAACCAGTACCCCACTTTGGAGGAGTGGCCCTAAGGGTCCTAAGTCGCTTTGCAATGCCTGCGGAATTAGGAAAAGGAAGGCAAGAAGGGCAATGGCCGAAGCTGCAGCAGCTGCGAATGGTTCGGTGGATATTGGATCATCTAATTCTACAATTAGAATTACAAAGACCAGAGCGCATAACAAGCTGGAAAAGAAACATGGTACAAACCATTTTGGTCAATTCAAGAGCAAGGGCAAAAGCACTACGTCTCGGCTGGAAAGGAAGCCCAGTTTCAGCAATGACGAAGAAGTAACTGCAGCCGCGCAACTTCTAATGGAATTATCTTGCGCCTTCCTTCACATTTa 767 0.4472 MTPVSLNRPPPANSSYPLIGDQIHDQPQLFISPNNRPSSSTLSYHTFFDQEGFEAVFHAASSNYQAYSTSDQAAVMDELLMSNRTKDKEISKSSHGYAESSKWMPSKMRLMRKMMTTPDAAENSQRISPSNTTRVCSDCNTTSTPLWRSGPKGPKSLCNACGIRKRKARRAMAEAAAAANGSVDIGSSNSTIRITKTRAHNKLEKKHGTNHFGQFKSKGKSTTSRLERKPSFSNDEEVTAAAQLLMELSCAFLHI 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00564 255 Gene3D - 130 175 IPR013088 GO:0006355|GO:0008270
Bva10g00564 255 ProSiteProfiles GATA-type zinc finger domain profile. 130 166 IPR000679 GO:0006355|GO:0043565
Bva10g00564 255 ProSitePatterns GATA-type zinc finger domain. 136 161 IPR000679 GO:0006355|GO:0043565
Bva10g00564 255 CDD ZnF_GATA 135 164 IPR000679 GO:0006355|GO:0043565
Bva10g00564 255 Pfam GATA zinc finger 136 169 IPR000679 GO:0006355|GO:0043565
Bva10g00564 255 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 254 - -
Bva10g00564 255 SMART GATA_3 130 181 IPR000679 GO:0006355|GO:0043565
Bva10g00564 255 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 254 - -
Bva10g00564 255 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 129 169 - -
Bva10g00564 255 MobiDBLite consensus disorder prediction 207 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00564 Bva-Chr10 5144264 5145880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00564 100 165 C2C2-Gata Transcription Factor Family AT4G26150 52.381 1.23e-20 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva10g00564 GATA 6.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00564 - - zju:107420088 162.54