Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00557 atggcAGAAGAAAACAACGGAAAAGACAGAAAGTGCACGTCAGAtggGATCTATGAGTGGAAGAACCAACCAGCTTCCCATTTAATTTTCCAGTATATGATGAAAGGTTTGGTGGTAGACGAAGCTATGTCCAATTTGACATCTGCGTCTAGTGAAATAAGTGCTTCTTCGGGGAACCCAGCTCAACAATCCTGCGTCTCAACAAATCAAGAACCACAAcccaaaaagaagagaaatctCCCAGGCAACCCAGACCCAGATGCTGAAGTGATAGCCTTGTCTCCCAAGACCCTCTTGGCAACGAACCGGTTTATTTGTGAGATTTGTAACAAAGGCTTTCAAAGAGATCAAAATCTTCAGCTTCATAAAAGAGGCCACAACTTGCCATGGAAGCTAAAGCAGAGAACAAACAAAGATATAATTAGAAAGAAGGTGTACGTGTGCCCAGAGCCAACATGTGTTCACCATGATCCCTCGAGGGCCCTTGGAGACCTCACTGGGGTCAAGAAGCACTTTTGCAGGAAGCACGGCGAGAAGAAATGGAAGTGTGAAAAGTGCTCCAAGCGTTACGCAGTTCAATCCGACTGGAAAGCTCATTCCAAAATTTGTGGTACCAGAGAGTACAAATGTGACTGCGGAACCATTTTCTCCAGGAGGGACAGTTTCATAACTCACAGAGCTTTCTGTGATGCTTTAACACAGGAAAGTGCCAGAGCAATAACAGCAGTGAATCCACTGCTAAGTAGCTATGGCCTTCAACCATCATctatgaagaaagaacaagaatTCAACCTAAGGCCCGAAATTCCCCCGTGGCTAGCTTGCCCGCAAGTGGGAGAAGCAGCTGGTAGTGGTAGACCTCTCCGCTCTTTAGATTTCTCTTCAGCATTACTACAAACACCTTTGGAGCAATCCTTAATCCACCAagaaaaccctaaccctagtAACTTGATGCCTTCGTTCCAATCCGCAAATTCACCTCACATGTCAGCCACTGCTTTGCTGCAAAAAGCATCACAAATAGGTACAGGGTATACCTCATCGTCAATGccatcatcatcttcagcTGTTTCAACTTTGGGAATGTCTTCACGTGAAGAAATGGGAACTGGGTTTGCTCAGCATGGCTTTCCTTCTTATGGCATTGCAACTGCAAATACAGGAGCTCAAGCAACAGcgtcttcttttttccatgaTATGATGGGTTCTGGGGGTTCAGCTACTGGATTCGAGGAGGTTCTCAGGGGAATGTTGAATCCAACAAAAGAAGGTAACTTTCATGAGCTTCTTTCAAAATCAACAGAACCCCAGTTTAATAACAGCAACAATAAGGGTACTGCCGCTGGGGGTGCCAATGATGAAATGACGAGAGATTTTCTGGGTCTTAAAGCATTTTCTCAAAGAGATATTTTCAACTTATCTGGGTTTGATCATTTGGGTTCTTCCTCGTTTGGTAAGCAAAATCAGAACCAAACACCTTGGCAAGATTA 1490 0.4154 MAEENNGKDRKCTSDGIYEWKNQPASHLIFQYMMKGLVVDEAMSNLTSASSEISASSGNPAQQSCVSTNQEPQPKKKRNLPGNPDPDAEVIALSPKTLLATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKQRTNKDIIRKKVYVCPEPTCVHHDPSRALGDLTGVKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALTQESARAITAVNPLLSSYGLQPSSMKKEQEFNLRPEIPPWLACPQVGEAAGSGRPLRSLDFSSALLQTPLEQSLIHQENPNPSNLMPSFQSANSPHMSATALLQKASQIGTGYTSSSMPSSSSAVSTLGMSSREEMGTGFAQHGFPSYGIATANTGAQATASSFFHDMMGSGGSATGFEEVLRGMLNPTKEGNFHELLSKSTEPQFNNSNNKGTAAGGANDEMTRDFLGLKAFSQRDIFNLSGFDHLGSSSFGKQNQNQTPWQD 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00557 496 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Bva10g00557 496 Gene3D Classic Zinc Finger 159 239 - -
Bva10g00557 496 MobiDBLite consensus disorder prediction 432 449 - -
Bva10g00557 496 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 46 476 - -
Bva10g00557 496 SMART c2h2final6 181 201 IPR013087 -
Bva10g00557 496 SMART c2h2final6 104 126 IPR013087 -
Bva10g00557 496 SMART c2h2final6 146 176 IPR013087 -
Bva10g00557 496 MobiDBLite consensus disorder prediction 476 496 - -
Bva10g00557 496 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 126 IPR013087 -
Bva10g00557 496 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 46 476 - -
Bva10g00557 496 SUPERFAMILY beta-beta-alpha zinc fingers 103 201 IPR036236 -
Bva10g00557 496 MobiDBLite consensus disorder prediction 432 453 - -
Bva10g00557 496 MobiDBLite consensus disorder prediction 50 76 - -
Bva10g00557 496 Pfam Zinc-finger double-stranded RNA-binding 104 126 IPR022755 -
Bva10g00557 496 MobiDBLite consensus disorder prediction 50 88 - -
Bva10g00557 496 Gene3D Classic Zinc Finger 84 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00557 Bva-Chr10 5110302 5113080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00557 39 351 IDZ Gene Family AT1G55110 54.270 2.85e-121 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva10g00557 zf-C2H2_jaz 5.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00557 K25870 - vvi:100257789 568.926