LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva10g00554	ATGGAGGGAATTAGagtgaaagaggaagaaacaTTCCCGTGCACAGCTggttcatcatcttcttcgtCTTCGAGCTTGCCACCGCAACCCATGGAAGGCTTGCACGAGGTGGGTCCTCCTCCATTCCTTACCAAGACCTTTGAAATGGTTGAAGACCCATCGACCGATTCAATCGTCTCGTGGAGCACAGCACGCAACAGCTTCATCGTCTGGGATCCTTACAGGTTCTCCACTGCCATTCTTCCGCGTCACTTCAAGCACTGTAACTTCTCCAGCTTCATTCGCCAGCTCAACACATatGGTTTCAGAAAAATTGATCCTGATCGATGGGAATTCGCCAACGAAGGGTTTTTGGGTGGTCAGAAGCACTTATTGAAGACTattaagagaagaagaaatgttTCACAGAGTATGCAACAGCAAGGAGGAGGGGTTTGTGTTGAATTGGGTCATTGTGGGTTGGAAGGTGACCTTGAGAGGTTAAGGAGAGACAGGACCGTGTTAATGGCCGAAATTGTAAGGTTGGGACAGCATCAGCAAAACTCAAGCGAGCAATTGATTGCCATGGAGGCCAGATTACAAACCACGGAGAGGAAGCAGCAACAAATACTCACTTTCCTTGCTAAAGCATTAAATAACCCTTCTTTTGTACAGCAGCTTGTCCAGATAAATTCCCAGAACAGAGAATTACAGGGAACTGTAGAGATTAGACGAAAGCGGAGGTTGACTGCGAGCCCCAGCTTGGAGAATTTGCAACAAGATCCTGTAACAGTGGCTGTGCCCAGTGAACCGTTGGTGGATTATTCATGCCAAGAGCAACAAGAATTAGCAACCATAGAGTCCGAGATAGAGACTTTTTTCTCTGCTGCTAATGATGATGAATCGATCAATGAATTTAGAGACCCAATTTCCAGTGGTATGGCGACAGCTAGTGGGAGCAGCTTGGGTTCAGTTAGTGACGCAATGTGGAAGGACTTGCTGAATGAAGACTTGGCTCGGAATTCAGAGGAGGAAGTCATACTCGGTGATTCTGCTAATATTGATGTGCCAGTGGAGGATTTGGTTGCAAAGCCCGATGAGTGGACTGAGGACTTGCAAGATCTGGTGGATCAAATGGATTATCTCGTGTCCAAACCTAGTCTACAAAAGTG	1151	0.4474	MEGIRVKEEETFPCTAGSSSSSSSSLPPQPMEGLHEVGPPPFLTKTFEMVEDPSTDSIVSWSTARNSFIVWDPYRFSTAILPRHFKHCNFSSFIRQLNTYGFRKIDPDRWEFANEGFLGGQKHLLKTIKRRRNVSQSMQQQGGGVCVELGHCGLEGDLERLRRDRTVLMAEIVRLGQHQQNSSEQLIAMEARLQTTERKQQQILTFLAKALNNPSFVQQLVQINSQNRELQGTVEIRRKRRLTASPSLENLQQDPVTVAVPSEPLVDYSCQEQQELATIESEIETFFSAANDDESINEFRDPISSGMATASGSSLGSVSDAMWKDLLNEDLARNSEEEVILGDSANIDVPVEDLVAKPDEWTEDLQDLVDQMDYLVSKPSLQK	383

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bva10g00554	383	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-6B	13	341	-	-
Bva10g00554	383	SMART	hsfneu3	38	131	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Bva10g00554	383	SUPERFAMILY	"Winged helix" DNA-binding domain	38	131	IPR036390	-
Bva10g00554	383	Gene3D	-	35	132	IPR036388	-
Bva10g00554	383	PRINTS	Heat shock factor (HSF) domain signature	80	92	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Bva10g00554	383	PRINTS	Heat shock factor (HSF) domain signature	93	105	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Bva10g00554	383	PRINTS	Heat shock factor (HSF) domain signature	42	65	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Bva10g00554	383	Pfam	HSF-type DNA-binding	42	131	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Bva10g00554	383	MobiDBLite	consensus disorder prediction	13	29	-	-
Bva10g00554	383	ProSitePatterns	HSF-type DNA-binding domain signature.	81	105	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva10g00554	Bva-Chr10	5093331	5095548	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva10g00554	11	379	HSF	AT2G26150	51.613	1.88e-123	358

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Bva10g00554		HSF_DNA-bind	1.3e-30	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva10g00554	K09419		-	qsu:112015615	507.679

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva10g00554	10	5093331	5095548	Bva06g02243	06	14657196	14659014	BWGD

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