Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00554 ATGGAGGGAATTAGagtgaaagaggaagaaacaTTCCCGTGCACAGCTggttcatcatcttcttcgtCTTCGAGCTTGCCACCGCAACCCATGGAAGGCTTGCACGAGGTGGGTCCTCCTCCATTCCTTACCAAGACCTTTGAAATGGTTGAAGACCCATCGACCGATTCAATCGTCTCGTGGAGCACAGCACGCAACAGCTTCATCGTCTGGGATCCTTACAGGTTCTCCACTGCCATTCTTCCGCGTCACTTCAAGCACTGTAACTTCTCCAGCTTCATTCGCCAGCTCAACACATatGGTTTCAGAAAAATTGATCCTGATCGATGGGAATTCGCCAACGAAGGGTTTTTGGGTGGTCAGAAGCACTTATTGAAGACTattaagagaagaagaaatgttTCACAGAGTATGCAACAGCAAGGAGGAGGGGTTTGTGTTGAATTGGGTCATTGTGGGTTGGAAGGTGACCTTGAGAGGTTAAGGAGAGACAGGACCGTGTTAATGGCCGAAATTGTAAGGTTGGGACAGCATCAGCAAAACTCAAGCGAGCAATTGATTGCCATGGAGGCCAGATTACAAACCACGGAGAGGAAGCAGCAACAAATACTCACTTTCCTTGCTAAAGCATTAAATAACCCTTCTTTTGTACAGCAGCTTGTCCAGATAAATTCCCAGAACAGAGAATTACAGGGAACTGTAGAGATTAGACGAAAGCGGAGGTTGACTGCGAGCCCCAGCTTGGAGAATTTGCAACAAGATCCTGTAACAGTGGCTGTGCCCAGTGAACCGTTGGTGGATTATTCATGCCAAGAGCAACAAGAATTAGCAACCATAGAGTCCGAGATAGAGACTTTTTTCTCTGCTGCTAATGATGATGAATCGATCAATGAATTTAGAGACCCAATTTCCAGTGGTATGGCGACAGCTAGTGGGAGCAGCTTGGGTTCAGTTAGTGACGCAATGTGGAAGGACTTGCTGAATGAAGACTTGGCTCGGAATTCAGAGGAGGAAGTCATACTCGGTGATTCTGCTAATATTGATGTGCCAGTGGAGGATTTGGTTGCAAAGCCCGATGAGTGGACTGAGGACTTGCAAGATCTGGTGGATCAAATGGATTATCTCGTGTCCAAACCTAGTCTACAAAAGTG 1151 0.4474 MEGIRVKEEETFPCTAGSSSSSSSSLPPQPMEGLHEVGPPPFLTKTFEMVEDPSTDSIVSWSTARNSFIVWDPYRFSTAILPRHFKHCNFSSFIRQLNTYGFRKIDPDRWEFANEGFLGGQKHLLKTIKRRRNVSQSMQQQGGGVCVELGHCGLEGDLERLRRDRTVLMAEIVRLGQHQQNSSEQLIAMEARLQTTERKQQQILTFLAKALNNPSFVQQLVQINSQNRELQGTVEIRRKRRLTASPSLENLQQDPVTVAVPSEPLVDYSCQEQQELATIESEIETFFSAANDDESINEFRDPISSGMATASGSSLGSVSDAMWKDLLNEDLARNSEEEVILGDSANIDVPVEDLVAKPDEWTEDLQDLVDQMDYLVSKPSLQK 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00554 383 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 13 341 - -
Bva10g00554 383 SMART hsfneu3 38 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva10g00554 383 SUPERFAMILY "Winged helix" DNA-binding domain 38 131 IPR036390 -
Bva10g00554 383 Gene3D - 35 132 IPR036388 -
Bva10g00554 383 PRINTS Heat shock factor (HSF) domain signature 80 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva10g00554 383 PRINTS Heat shock factor (HSF) domain signature 93 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva10g00554 383 PRINTS Heat shock factor (HSF) domain signature 42 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva10g00554 383 Pfam HSF-type DNA-binding 42 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva10g00554 383 MobiDBLite consensus disorder prediction 13 29 - -
Bva10g00554 383 ProSitePatterns HSF-type DNA-binding domain signature. 81 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva10g00554 383 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 13 341 IPR027725 -
Bva10g00554 383 Coils Coil 179 199 - -
Bva10g00554 383 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00554 Bva-Chr10 5093331 5095548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00554 11 379 HSF AT2G26150 51.613 1.88e-123 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Bva10g00554 HSF_DNA-bind 1.3e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00554 K09419 - qsu:112015615 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00554 10 5093331 5095548 Bva06g02243 06 14657196 14659014 BWGD