Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00538 atgGAGGATATCGAGGAGGAAGAGAACGGAGAAGAGGAGGTCTTGGGCTCCAGCTTGACCATGGAGAAGGTGGCTGCAGCTAAGAAGTTCATAGAGAATCACTATAGGGCGCAGATGAAGAACATCCAAGAGCGCAAGGAGAGacgTTGGATTCTAGAAAGGCGATTGGCTTCCTCAGATGTGCCAAATGAGGAACGAATCAACCTCATCAAAGATTTAGAGCGAAAGGAGACAGAATTTATGCGACTAAAAAGGCATAAGACATgtgttgatgattttgagCTTTTGACCATCATTGGAAGGGGGGCCTTTGGGGAGGTTAGACTGTGTCGGGAGAAGAAATCAGGAAACATTTATGCTATGAAAAAGCTGAAGAAATCTGAAATGCTTAAGAGAGGCCAGgtGGAACATGTTAGAGCTGAGAGGAACTTGCTGGCTGAAGTTGCTAGTCATTGCATAGTGAAACTTTACTATTCATTTCAGGATGCTGagtatttgtatttaattatggAATATCTTCCTGGCGGTGACATGATGACTCTACTGATGAGGGAAGATACCTTAAGTGAAAATGTTGCTAGATTTTACATCGCACAGAGTGTTCTGGCCATAGAATCTATTCATAAGCACAATTACATTCACAGAGATATTAAACCCGATAACCTACTTCTGGACAAAAATGGTCATATGAAGCTCTCAGATTTTGGCCTCTGTAAGCCTCTTGATTGTACTACTCTGTCTACGCTGCATGAAAATCAGACCATCCATGATGAAAATTTGACAGAGCCAATGGATATTGATGGATGTTTTCGTGACGCGGATAATCGGAGCAGCTGGAGAAGCCCACGCGAACAACTTCAGCATTGGCAGATGAACAGGAGGAAGTTGGCATTCTCAACAGTGGGAACGCCAGATTATATTGCTCCTGAAGTGCTGCTGAAAAAAGGATACGGAATGGAATGTGATTGGTGGTCACTGGGAGCAATAATGTACGAAATGCTAGTTGGCTATCCACCATTTTACTCAGATGATCCAATAACCACTTGTAGAAAGATTGTTCATTGGAAAAATCATTTAAGATTTCCCGAAGATTCTCACTTGTCACTTGAGGCCAAGGATCTAATTTGCAGATTGCTGTGTGATGTTGAACATAGATTAGGCACTCGAGGGGCACGTGAAATTAAGGCTCATCCTTGGTTCAAGGGCGTTGAGTGGGATAAATTGTATGAAATGGAGGCAGCATTTAAACCACAAGTCAATTGGGAGTTGGATACCCAAAACTTCATGAAGTTTGACGAAGTGGACCCGCCAACAGCAGCACGAACTGGCTTGGCGTCCTCACGAAAGATGCAATTGAACCCCAAAGATCTAAACTTTGTTGGTTACACCTACAAGAACTTCGATGCTGTGAAAGGGCTTCGCCGATCTTTGGGTGATTCTAGTCAAGATCATTCCACTAAACTGGAAGCTGATGAAACAAGTTACCAAATGCTCGCATCATCTGGAGATCCCATGTTACCATA 1523 0.4215 MEDIEEEENGEEEVLGSSLTMEKVAAAKKFIENHYRAQMKNIQERKERRWILERRLASSDVPNEERINLIKDLERKETEFMRLKRHKTCVDDFELLTIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLKRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLSENVARFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCTTLSTLHENQTIHDENLTEPMDIDGCFRDADNRSSWRSPREQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWKNHLRFPEDSHLSLEAKDLICRLLCDVEHRLGTRGAREIKAHPWFKGVEWDKLYEMEAAFKPQVNWELDTQNFMKFDEVDPPTAARTGLASSRKMQLNPKDLNFVGYTYKNFDAVKGLRRSLGDSSQDHSTKLEADETSYQMLASSGDPMLP 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00538 507 Gene3D Transferase(Phosphotransferase) domain 1 179 417 - -
Bva10g00538 507 ProSiteProfiles AGC-kinase C-terminal domain profile. 401 474 IPR000961 GO:0004674|GO:0005524|GO:0006468
Bva10g00538 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Bva10g00538 507 CDD STKc_NDR_like 91 465 - -
Bva10g00538 507 PANTHER AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN 13 487 - -
Bva10g00538 507 SUPERFAMILY Protein kinase-like (PK-like) 90 450 IPR011009 -
Bva10g00538 507 SMART pkinase_C_6 401 466 IPR000961 GO:0004674|GO:0005524|GO:0006468
Bva10g00538 507 Pfam Protein kinase domain 94 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva10g00538 507 Pfam Protein kinase domain 292 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva10g00538 507 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
Bva10g00538 507 ProSiteProfiles Protein kinase domain profile. 93 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva10g00538 507 SMART serkin_6 93 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva10g00538 507 Gene3D Phosphorylase Kinase; domain 1 84 178 - -
Bva10g00538 507 Pfam Protein kinase C terminal domain 422 464 IPR017892 GO:0004674|GO:0005524|GO:0006468
Bva10g00538 507 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00538 Bva-Chr10 5016894 5023267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00538 1 506 AGC Kinase Gene Family AT4G33080 80.315 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Bva10g00538 Pkinase 2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00538 K08790 - gmx:100815717 920.228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00538 10 5016894 5023267 Bva10g00538 10 5016894 5023267 ECH
Bva10g00538 10 5016894 5023267 Bva06g02255 06 14713274 14719071 ECH