Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00537 ATGGAGGAGATGTCGTCTGCGGTTGCAGTGCCATTGAGAGTAGGTTCTGATGAGGATCGGGATCAGAATGGTGGGAATATGGGGAATGAAGTTAGTATTACAGTAATCACTCCACCGAACCAGTATAGGGAAGGAGAAATTCCTTTATTGGATATGatatctcaaaataaaagCACGTTGGTTGCTACTGATGAAGCGCTAACCCCAGAAATTGAGGAGGATGATTTGTTATCAGTGGAGGGTGATCAGATTATTGATAGCTCTTGTTCTCTTTCAATAGCCAGTGAGAACAGTAGTATATGTGGAGAGGAGTTCATTGGTTTTGAGGCTGCTTCAGAAGTAGGAACACCAAGTGCCTTAGATAATGACAAGAGCATCCCTGGTGTCAATATTGTTGCCAGGGCTGCTGAATTGGGGGACCCTAATGCTGAGGCAGAAGTTGCGAGTGAACCCCTTGCTGTGACAGTGAGCCTTGATGATGAAGAGACTGTGGTTAGATCTGGCGATAAGCCTTCCACAGTTGTTCTTCAGCTGCCTCTGGAAAAAGCGGTGAGTGGAACTGTTGGTCGTAGTGTTTTTGAATTGGATTATGCCCCACTTTGGGGATTTATATCTGTGTGTGGAAGAAGGCCTGAGATGGAAGATGCAGTTGCAGCTGTACCTCGATTTTTGAAAATTCCTATTGAAATGCTAATTGGTGATCGAGTACTTGATGGAATGGACAAGTGTTGGAGTCAACAGACCATTCATTTCTTCGGGGTCTATGACGGCCATGGTGGCTCTCAGGTGGCAAATTATTGTCGTGAACGTATTCATTTAGCTTTGGCTGAAGAAATAGAATTTGCCAGGGAAGGCCTTATAAATGGAAGTATCAAGGATGAATGTCAAGATCAGTGGATAAAGGCTTTTTCTAATTGTTTTCTAAAGGTTGATGCTGAAGTTGGAGGAAATGCTAACTCTGAACCTATTGCTCCAGAAACCGTTGGCTCCACTGCTGTTGTTGCTATTATCTGCTCATCTCATATTATAGTTGCAAATTGTGGTGATTCAAGAGCTGTTCTGTGTCGTGGCAAAGAACCCATGGCATTGTCAGTGGACCATAAACCAAATAGAGATGATGAATATGCAAGAATTGAAGCAGCTGGAGGCAAGGTAATACAATGGAATGGTCATCGTGTATTTGGTGTTCTTGCAATGTCAAGGTCTATTGGTGATAGATATTTGAAACCATGGATTATTCCAGAACCAGAAGTTACGTTTCTTCCTCGTGGAAAGGATGATGAATGCATCATTTTGGCCAGTGATGGACTGTGGGATGTGATGACAAACGAAGAAGCATGCGACCTAGCTCGGAGACGAATCCTTCTCTGGCACAAGAAAAATGGCGTTGCACAACCCTCAGAAAGGGGGGACGGAATTGATCCTGCTGCTCAAGCAGCTGCAGAGTACCTAGCAAACTTTGCTCTTCAAAAAGGTAGCAAGGATAACATCACCGTGATCGTGGTGGATTTGAAAgctcaaagaaaatttaagaacAAGACATG 1544 0.4294 MEEMSSAVAVPLRVGSDEDRDQNGGNMGNEVSITVITPPNQYREGEIPLLDMISQNKSTLVATDEALTPEIEEDDLLSVEGDQIIDSSCSLSIASENSSICGEEFIGFEAASEVGTPSALDNDKSIPGVNIVARAAELGDPNAEAEVASEPLAVTVSLDDEETVVRSGDKPSTVVLQLPLEKAVSGTVGRSVFELDYAPLWGFISVCGRRPEMEDAVAAVPRFLKIPIEMLIGDRVLDGMDKCWSQQTIHFFGVYDGHGGSQVANYCRERIHLALAEEIEFAREGLINGSIKDECQDQWIKAFSNCFLKVDAEVGGNANSEPIAPETVGSTAVVAIICSSHIIVANCGDSRAVLCRGKEPMALSVDHKPNRDDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVTFLPRGKDDECIILASDGLWDVMTNEEACDLARRRILLWHKKNGVAQPSERGDGIDPAAQAAAEYLANFALQKGSKDNITVIVVDLKAQRKFKNKT 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00537 514 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 93 514 - -
Bva10g00537 514 ProSitePatterns PPM-type phosphatase domain signature. 251 259 IPR000222 GO:0043169
Bva10g00537 514 Gene3D - 187 514 IPR036457 -
Bva10g00537 514 MobiDBLite consensus disorder prediction 1 31 - -
Bva10g00537 514 CDD PP2Cc 205 504 IPR001932 -
Bva10g00537 514 SUPERFAMILY PP2C-like 196 505 IPR036457 -
Bva10g00537 514 Pfam Protein phosphatase 2C 236 497 IPR001932 -
Bva10g00537 514 ProSiteProfiles PPM-type phosphatase domain profile. 200 504 IPR001932 -
Bva10g00537 514 SMART PP2C_4 186 502 IPR001932 -
Bva10g00537 514 PANTHER ALPHABET, ISOFORM E-RELATED 93 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00537 Bva-Chr10 5011054 5015874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00537 97 514 PP2C-type Phosphatase Gene Family AT1G17550 56.643 2.52e-164 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00537 K14497 - gmx:100791754 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00537 10 5011054 5015874 Bva10g00537 10 5011054 5015874 ECH
Bva10g00537 10 5011054 5015874 Bva06g02256 06 14719958 14723712 ECH