Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00528 ATGTCCTTTTATGAAATCCGGTTAATATATTCAGTTCAAATCCGATTCAACCTATACTCTCTCTCCACTCAAAGGTCAAATAATTTCCCATCTTTCCCTCCATTTAAGAGACTACCGGCGAGTACCTCCAATTTGCAAGCAATGGAGGGAGGTGCTCCGTACAATCCTCGTACAGTCGAGGAGGTCTTCAGGGATTTCAAGGGCCGAAGAGCTGGCATGATTAAGGCTCTCACCACCGATGTTGAAGAGTTCTATCAGCAGTGTGATCCGGAGAAGGAAAATCTTTGCCTTTATGGATTTCCCAGTGAGCAATGGGAAGTCAATCTGCCTGCTGAGGAGGTGCCTCCAGAGCTTCCAGAGCCTGCATTGGGCATCAACTTTGCTAGAGATGGCATGGAAGAAAAGGACTGGCTATCGTTGGTTGCTGTCCACAGTGATGCGTGGTTACTTGCTGTGGCTTTCTATTTCGGTGCTAGGTTTGGATTTGATAAGGCTGATAGGAAACGGCtgtttaatatgataaatgatCTTCCAACAATATTTGAGGTTGTTACAGGGGCGGCCAAGAAACAAGcacaaggaaaggaaaagtCATCAGTTTCTAATCATAGCAGTAACAAATCTAAATCAAACTCTAAGCGAGGATCTGAATCTCAGGGAAAGTATTCGAAAGCAATGCAATCAAAGGATGAGGATGAGGAGGGTTtggaagaggaagatgaagacGAGCATGGGGAGACACTATGTGGGGCATGTGGAGAGAACTATGCAGCCGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCATGGGAAGTGTGTAAAGATTACCCCTGCTAGGGCTGAGCATATCAAGCAGTATAAATGTCCGTCGTGCAGCAACAAGAGAGCTCGACCTTGACAATGGTTAGGATGGTGACTACCTCATATCCTGGCGATTTGATGACTGCTAATTTGTGTAATAGGTCAGATTTATTAGTCTTAGTGTCAATTTCACGAAATCTGTTTTAAATGTTATGTTAGGTTCTTGAGGTACTGCTTCTTCGATCTTTAATTAGGATATTTCTGTCAGGAGGGTACTTTTCTTCTGGCTCTGGACTTGATTAAATGCTTCCTTAGATTCAATGGGGTCTGTAGTGTATTTCGTGTCCATAATGTTAATGAAGTTCTACTCCCCGTAATGTTACTCTTGATGATACAAATTTTAGCATTTGTTGAGGACAGTTGAGAAATGGTTAAGA 1249 0.4147 MSFYEIRLIYSVQIRFNLYSLSTQRSNNFPSFPPFKRLPASTSNLQAMEGGAPYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGAAKKQAQGKEKSSVSNHSSNKSKSNSKRGSESQGKYSKAMQSKDEDEEGLEEEDEDEHGETLCGACGENYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00528 302 MobiDBLite consensus disorder prediction 192 242 - -
Bva10g00528 302 ProSiteProfiles Zinc finger PHD-type profile. 246 298 IPR019787 -
Bva10g00528 302 SUPERFAMILY FYVE/PHD zinc finger 238 299 IPR011011 -
Bva10g00528 302 SMART PHD_3 248 296 IPR001965 -
Bva10g00528 302 ProSitePatterns Zinc finger PHD-type signature. 249 295 IPR019786 -
Bva10g00528 302 MobiDBLite consensus disorder prediction 192 223 - -
Bva10g00528 302 PANTHER CPG BINDING PROTEIN 51 302 IPR045104 GO:0006355|GO:0042393
Bva10g00528 302 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 51 302 - -
Bva10g00528 302 Pfam Alfin 58 186 IPR021998 GO:0006355|GO:0042393
Bva10g00528 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 297 IPR013083 -
Bva10g00528 302 Pfam PHD-finger 249 298 IPR019787 -
Bva10g00528 302 CDD PHD_AL_plant 248 298 IPR044104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00528 Bva-Chr10 4975758 4979276 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00528 48 301 Alfin-like Transcription Factor Family AT3G42790 78.431 6.96e-129 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Bva10g00528 Alfin 8.1e-70 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00528 - - pop:7476667 458.373