Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00524 ATGGAGGGAGGTGCTCCGTACAATCCTCGTACACTCGAGGAGGTCTTCAGGGATTTCAAGGGCCGAAGAGCTGGTATGATTAAGGCTCTCACCACCGATGTTGAAGAGTTCTATCAGCAGTGTGATCCGGAGAAGGAAAATCTTTGCCTTTATGGATTTCCCAGTGAGCAATGGGAAGTCAATCTGCCTGCTGAGGAGGTGCCTCCAGAGCTTCCAGAGCCTGCATTGGGCATCAACTTTGCTAGAGATGGCATGGAAGAAAAGGACTGGCTATCGTTGGTTGCTGTCCACAGTGATGCGTGGTTACTTGCTGTGGCTTTCTATTTCGGTGCTAGGTTTGGATTTGATAAGGCTGATAGGAAACGGCtgtttaatatgataaatgatCTTCCAACAATATTTGAAGTTGTTACAGGGACGGCCAAGAAACAAGcacaaggaaaggaaaagtCATCAGTTTCTAATCATAGCAGTAACAAATCTAAATCAAACTCTAAGCGAGGATCTGAATCTCAGGGAAAGTATTCGAAAGCAATGCAATCAAAGGATGAGGATGAGGAGGGTTtggaagaggaagatgaagacGAGCATGGGGAGACACTATGTGGGGCATGTGGAGAGAACTATGCAGCCGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCATGGGAAGTGTGTAAAGATTACCCTTGCTAGGGCTGAGCATATCAAGCAGTATAAATGTCCATCGTGCAGCAAAGATGCCATCATCCTATTCTCTGGCTGGCCCAAACACAGCCTTGGCATGTACATATTAGCTTTGTTGCTTGTATTTTTTGTAGCCATGGCTGCTGAAATTCTGTCCATCCAACGGTACCAGCCGGTGAAGCGCGGAACTAATCAACACAGCCTTGGCATGTACATATTAGCTTTGTTGCTTGTATTTTTTCTAGCCATGGCTGCTGAAATTCTGTCCATCCAACGGTGCCGGCCGGTGAAGCGCGGAACTAATCCGGTGGCGGAAGGAATCACTCAGGCCGCCATCTACGCCATTCGCATGGGTTTCCTTTACTTGGTCATGCTTGCTGTCATGTCCTTCAACCTGGGAATCTTCATAGCTGCCATCGTTGGCCACACCTTGGGATTCTTTGTCGTCGAATCTCGTGCGGTTGCTGTGGCCAACAAGGAAAACAAAGACGAGCTCCCCTACTCCACCATCATTCCTGCTAGTAACATATGAAACTTCCAAGTAATTTATCTTCCATATagttcatttcaatttttttttggctgtcTTGAATGTTATTTTTCAGGTATGTTCGATGTGAGTTTGTATATTTTACATCTGCTAGTTCTTGTGACG 1353 0.4375 MEGGAPYNPRTLEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGTAKKQAQGKEKSSVSNHSSNKSKSNSKRGSESQGKYSKAMQSKDEDEEGLEEEDEDEHGETLCGACGENYAADEFWICCDICEKWFHGKCVKITLARAEHIKQYKCPSCSKDAIILFSGWPKHSLGMYILALLLVFFVAMAAEILSIQRYQPVKRGTNQHSLGMYILALLLVFFLAMAAEILSIQRCRPVKRGTNPVAEGITQAAIYAIRMGFLYLVMLAVMSFNLGIFIAAIVGHTLGFFVVESRAVAVANKENKDELPYSTIIPASNINFQVIYLPYSSFQFFFGCLECYFSGMFDVSLYILHLLVLV 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00524 449 CDD PHD_AL_plant 201 249 IPR044104 -
Bva10g00524 449 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
Bva10g00524 449 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Bva10g00524 449 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 250 - -
Bva10g00524 449 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
Bva10g00524 449 SUPERFAMILY FYVE/PHD zinc finger 191 252 IPR011011 -
Bva10g00524 449 SMART PHD_3 201 249 IPR001965 -
Bva10g00524 449 PANTHER CPG BINDING PROTEIN 4 250 IPR045104 GO:0006355|GO:0042393
Bva10g00524 449 Pfam PHD-finger 202 250 IPR019787 -
Bva10g00524 449 MobiDBLite consensus disorder prediction 145 195 - -
Bva10g00524 449 Pfam Ctr copper transporter family 335 381 IPR007274 GO:0005375|GO:0016021|GO:0035434
Bva10g00524 449 MobiDBLite consensus disorder prediction 145 176 - -
Bva10g00524 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 250 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00524 Bva-Chr10 4965407 4969085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00524 1 249 Alfin-like Transcription Factor Family AT3G42790 77.200 4.15e-121 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Bva10g00524 Alfin 5.3e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00524 - - mnt:21387296 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00524 10 4965407 4969085 Bva10g00524 10 4965407 4969085 ECH
Bva10g00524 10 4965407 4969085 Bva06g02264 06 14745355 14748813 ECH
Bva06g00558 06 5904052 5908221 Bva10g00524 10 4965407 4969085 ECH
Bva05g01084 05 5565912 5570302 Bva10g00524 10 4965407 4969085 ECH