Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00513 ATGGGAAGGAGTCCTGAGGGAGCCAGAAGAGGTGCTTGGACAGctgaagaagataaaattctGTCAGATTACATCAACAAACATGGAGAAGGAAAATGGAGAAACGTTCCCAAACAAACAGGTCTGAGGAGGTGTGGAAAGGCTTGTAGGCTTCGATGGTTCAATTATCTGAGGCCTGATATCAAAAGAGGCAACATTACACCAGACGAAGTCGACCTCATCATCAGGCTCCACAAACTCTTAGGCAACAGATGGTCACTGATAGCAGGAAGGCTTCCGGGGAGAACAGACAACGAAATTAAAAACTACTGGAACACCAACTTAGCCAAGAGGGAATGGAGGAAGGAATCAAGTGTTtgtcaaaatgagaaaatggaaaCTGCAGAAGCAGAATTTCTCCAAGAGCCAGAACTGAAACCAAGAACTGATCAAGATTATGATTCTAATGTTGCCATCGTGGGATCTTCTTATGCTGATCTGCAACAGCCACCGTTGAACTCcacagaagaaaatgaatcaaatttcctgttggattttgattttgattttgaaattggcCAAATTACATTTTCAGAGTTTATGGACGAAGATTTTACCAAGTCCCAGCTGTTCGAGATGAATGGTTTAACCAGTGAGTCTGCAGCATTCTCCAGCGAAACCACGGACACGCAAGTAAATTGGAATGCCTGTGACTTTGACAAGAGCAGTGAAACTGATACACCAGCATGTTCTAGCGAAGCGCTTTGGAGTTATAGCGATTGTTTTGACGTTACCCTAGATTCCGAACAAGGGTCTTGGCGCGATTTCATAGATTTAGCCGAAGAATGTCTCATCTGGgatta 842 0.3967 MGRSPEGARRGAWTAEEDKILSDYINKHGEGKWRNVPKQTGLRRCGKACRLRWFNYLRPDIKRGNITPDEVDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLAKREWRKESSVCQNEKMETAEAEFLQEPELKPRTDQDYDSNVAIVGSSYADLQQPPLNSTEENESNFLLDFDFDFEIGQITFSEFMDEDFTKSQLFEMNGLTSESAAFSSETTDTQVNWNACDFDKSSETDTPACSSEALWSYSDCFDVTLDSEQGSWRDFIDLAEECLIWD 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00513 280 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Bva10g00513 280 Gene3D - 10 62 - -
Bva10g00513 280 CDD SANT 12 57 IPR001005 -
Bva10g00513 280 PANTHER MYB-RELATED PROTEIN MYB4 5 208 - -
Bva10g00513 280 Pfam Myb-like DNA-binding domain 63 108 IPR001005 -
Bva10g00513 280 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Bva10g00513 280 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Bva10g00513 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 57 IPR017930 -
Bva10g00513 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Bva10g00513 280 CDD SANT 67 108 IPR001005 -
Bva10g00513 280 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 208 - -
Bva10g00513 280 SMART sant 62 110 IPR001005 -
Bva10g00513 280 SMART sant 9 59 IPR001005 -
Bva10g00513 280 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Bva10g00513 280 Gene3D - 67 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00513 Bva-Chr10 4921834 4923144 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00513 7 159 MYB Transcription Factor Family AT3G13540 55.556 3.96e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva10g00513 Myb_DNA-binding 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00513 K09422 - qsu:112011852 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00513 10 4921834 4923144 Bva10g00513 10 4921834 4923144 ECH
Bva06g00545 06 5835584 5837003 Bva10g00513 10 4921834 4923144 ECH
Bva05g01100 05 5661552 5662740 Bva10g00513 10 4921834 4923144 ECH