Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00488 ATGGATGGTGGTAGAGTTGAAGTGATAAATAGTAAGGGATGCTCTAGGCTGTTTTCACCTTCATTTAGAGGTCTACGGCCGTTCGAGCCAATGTCTCCTGTTTCGTCCTCTGCGGGTTCCGAACCGGTGGAACTGCAATCAAGTGCTCCTTTTGCTGGGCTTGTTATATGCGTTACTGGTCTATCTAAAGAAGCAAGGAAACAGGTCATGGAAGCTACGGAGAGATTAGGTGGCCAGTATAGCCCCAATTTGCATCCTCAATGTACCCATTTGGTCGTTCAGAGTTCTGGTGGACGTAAGTTTGAGCATGCACTGAAGCATGGAGCAAGAAATGGTCTTTTTGTTGTCACACTGGGATGGTTTGTGGACAGCGTCAGGAAAAATGTGAGATTGAGCGAATCACATTATTGTGTGAAGAATTATGGGGAAAACAATATTCACTTGGTTGATTTAAAACTGCCTCCTGGATATAAAAATGCTGAAGATTCTTGTCTTCCCACAAGAATACGTGAAGCAAAGCAAGCTGATGATATTGAAGGATTGCAAAGATTTTCTGGGAAAGAGTCTAGTAGAAATAGGGAGTCAACTTTGTCTGGTTGTTCCATCTATGTTGATCCAGACATTTCAGCTGAATTACGGAATAAGGTTGTTGAGACTTCTTACAGAGAAGGTGCTAGTTTGGTGGAACGATGGTCTGTCGGGTGCAACGTTAGTCATGTAGTCACAGAAGGGACTTCCATCCGAAGATATCTCGGATACTCTAGTAACCTCATTACACCTCTGTGGATTCTTAAAACAGCCAAGGACAAGTGTGTGCAAAGGCTTGTTCACATGTCCGCTGATTTGGCGAGGCAAGTTGGCTTGATGCTTGAGGACATTCATAATGGGGTTGCTGGGGAGGAAGTAATACCGCAAAAGTTCCCTGAAGATCTTAAGGGAGTTGAAAGTAAAATAGGTTACGCAGAAAGGCAGCAGATTGTGAATTCTGCGAAAATTGGTGTCAGAAATCGCCGTGGTCGTAGAATGCAGACTTGCCAGACTCCCATCCGTCCTATAACACCCAAAATCCTTCTGGATTCTATCTGTTGGTCAATTTCTGAGCCAACTTCTACTGCTTCCATTTACACAGACTCTCTCAGTGTTGAAGATTATAATGAAAACCATCCTTCCATCATTTCTGATGCCAAAAATTCAGAAACTTCATTTTCAAACTCCACTCGGCCTCTTACAGAAAGTGAGAAATCAGagttgatatttaaaaatcattttcttaccATACTCTTCCCAATTGATCGATTTGCTGAGATGGGGCCTTCGTGCAGAACATTTTTAAGCCATAATGGCTTTACATGTCTTCAGGTGTTGGATCATGTTTATGCTTTTTATCAGGAAAATTTGTCGACCCAGGAAATAGAAGCCGCAATTCATACTGATTCAAGACATGCTGACAGGCTTCGATCAGTGTACTTTAGTAAGGAAACTGCGGAGCGTGGGTATGTGATCTTCAAACGGGTTGATTTCTTGGGTAGTCGTATAAGTTTTGAAATGCTGAAGCGTGTAACTGGGGACAACAACTCTAATGTCTATGAGCTAATACTCAGAGCGTA 1607 0.4219 MDGGRVEVINSKGCSRLFSPSFRGLRPFEPMSPVSSSAGSEPVELQSSAPFAGLVICVTGLSKEARKQVMEATERLGGQYSPNLHPQCTHLVVQSSGGRKFEHALKHGARNGLFVVTLGWFVDSVRKNVRLSESHYCVKNYGENNIHLVDLKLPPGYKNAEDSCLPTRIREAKQADDIEGLQRFSGKESSRNRESTLSGCSIYVDPDISAELRNKVVETSYREGASLVERWSVGCNVSHVVTEGTSIRRYLGYSSNLITPLWILKTAKDKCVQRLVHMSADLARQVGLMLEDIHNGVAGEEVIPQKFPEDLKGVESKIGYAERQQIVNSAKIGVRNRRGRRMQTCQTPIRPITPKILLDSICWSISEPTSTASIYTDSLSVEDYNENHPSIISDAKNSETSFSNSTRPLTESEKSELIFKNHFLTILFPIDRFAEMGPSCRTFLSHNGFTCLQVLDHVYAFYQENLSTQEIEAAIHTDSRHADRLRSVYFSKETAERGYVIFKRVDFLGSRISFEMLKRVTGDNNSNVYELILRA 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00488 535 SUPERFAMILY BRCT domain 47 139 IPR036420 -
Bva10g00488 535 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 4 535 - -
Bva10g00488 535 Pfam Family of unknown function (DUF6699) 362 519 IPR046522 -
Bva10g00488 535 ProSiteProfiles BRCT domain profile. 46 138 IPR001357 -
Bva10g00488 535 SMART BRCT_7 48 128 IPR001357 -
Bva10g00488 535 SMART BRCT_7 194 270 IPR001357 -
Bva10g00488 535 ProSiteProfiles BRCT domain profile. 192 266 IPR001357 -
Bva10g00488 535 CDD BRCT_TopBP1_rpt2_like 50 128 - -
Bva10g00488 535 Pfam twin BRCT domain 54 120 IPR001357 -
Bva10g00488 535 Gene3D BRCT domain 49 140 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00488 Bva-Chr10 4801657 4806523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00488 42 138 Core DNA Replication Machinery Family AT1G77320 38.144 9.67e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00488 - - gmx:100815253 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00488 10 4801657 4806523 Bva10g00488 10 4801657 4806523 ECH