Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00484 ATGGTGAAACCGGCCATGGTTACTAGCAGTGCTAATAATCAATATCAAGTAAACAACTTTCCCACTAATAATCCAAATTCTTCTCATGAGATCAAGTACAAGGGCGTGAGAAAACGCAAATGGGGCAAATGGGTATCCGAAATCAGGCTTCCCAATTGCCGTGACCGGATTTGGTTGGGCTCTTACGACTCGCCGGAGAAGGCAGCAAGGGCTTTCGACGCAGCCCTTTACTGTCTACGAGGTCGCCATGCCAATTTCAATTTCCCTGATACCCCTTTCGAGGTCAGCATCGGTGCCGCTGACCAATCCCTCACTTCACAGGAGATTCAAGTTGTTGCAGCTAGGTTTGCTAATGAGCATGAGGAGGATGACAACGTTAATGAAGATGAAAGGGAAGAAGAGGATCAACCGAATATTGATAAAGAAGAATCCTCAGAGCATGTCTGCGGTGATACATTTAAATCCAATGATGATACCATGGTAAAGCAGACAGGATCCTTTTACAATGGAAGTGATGGGGACATGGATTGGTCCTTTTTAAACACGTTGGATAATTCGGATGTGGTTACCTCTGATTTAGGACTCTATTCTGAGCTAGACAAGATGCACTCAGGGGAGTTGTTTTATCCTACATCGCCACAACCTTTTCATGACAATATTGAGGACAATGGAGATATTGGGGCTCTTGATGATGATAATGCTTGTTCCCACCAATCATTCCTCTGGAACTTCTG 734 0.4455 MVKPAMVTSSANNQYQVNNFPTNNPNSSHEIKYKGVRKRKWGKWVSEIRLPNCRDRIWLGSYDSPEKAARAFDAALYCLRGRHANFNFPDTPFEVSIGAADQSLTSQEIQVVAARFANEHEEDDNVNEDEREEEDQPNIDKEESSEHVCGDTFKSNDDTMVKQTGSFYNGSDGDMDWSFLNTLDNSDVVTSDLGLYSELDKMHSGELFYPTSPQPFHDNIEDNGDIGALDDDNACSHQSFLWNF 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00484 244 MobiDBLite consensus disorder prediction 138 153 - -
Bva10g00484 244 CDD AP2 32 91 IPR001471 GO:0003700|GO:0006355
Bva10g00484 244 MobiDBLite consensus disorder prediction 1 28 - -
Bva10g00484 244 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Bva10g00484 244 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Bva10g00484 244 MobiDBLite consensus disorder prediction 123 137 - -
Bva10g00484 244 SUPERFAMILY DNA-binding domain 32 90 IPR016177 GO:0003677
Bva10g00484 244 MobiDBLite consensus disorder prediction 120 157 - -
Bva10g00484 244 Pfam AP2 domain 32 81 IPR001471 GO:0003700|GO:0006355
Bva10g00484 244 Gene3D AP2/ERF domain 31 90 IPR036955 GO:0003700|GO:0006355
Bva10g00484 244 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF017 22 244 - -
Bva10g00484 244 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Bva10g00484 244 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Bva10g00484 244 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 22 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00484 Bva-Chr10 4787494 4788523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00484 26 244 AP2-EREBP Transcription Factor Family AT1G19210 41.071 7.43e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva10g00484 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00484 - - qsu:111984657 211.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00484 10 4787494 4788523 Bva10g00484 10 4787494 4788523 ECH
Bva10g00484 10 4787494 4788523 Bva06g02298 06 14914565 14915299 ECH