Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00472 ATGATGGAGAGCCCTCGTGCCAAACTAGTTCAGCCTCTGACTCTGATATTGTATTGGTCTCTATGTTTGTTGGTGGCCATGGCGCAAACCAGAAACACAACGGTGGCAGTGAAAGTGGGGGTCGTACTTGACCTTGATGAAAAAATAGCGAAGATGGGGTTGAGCTGCATCAACATGTCCCTCACTGACTTGTATTACTCTCATTCTAATTACAACACCAGGCTCGTTTTCAACGTCAGAGACTCCCGCAAAGATGTTGTTACTGCCGCAGCTCAAgCTCTCGATCTCATAAAAGAAGAGCAAGTTCAAGCCATCATTGGACCGATATCTTCAATGGAGGCAGGATTTATAATTGGTCTTGGAGACAAAGCGCATGTACCCATCCTAAGCTTCTCGGCGACAAGTCCTTCTCTCACTTCACTTGGAAGTCCATATTTTTTCAGAATTGCCCAAAACGATTCAGCTCAAGTAGATGCCATCGGCGCAATCGTCCAAGCTTTTGGATGGAGAGAAGCAGTGCCCATTTACATAGACAACGAATTTGGGAAAGGAGTCATACCCTTTTTAACCAATGCTCTTCAAAAAGTCTATGCTCGCATCCCCTATCTCTCTGCTATTTCTCCTTCGGCCACAGATCAAGACATCAGAACAGAGCTCTACAAGTTGATGACCATGCAAACCAGAGTCTTTGTTGTGCACATGGGGCGTGATATTGGCCCTCGTCTCTTCACCATAGCAAAGCAGATTGGAATGATGGAGCAGGGTTATGTTTGGATTGTGAGCGATGGCATTGCTAATGAGTTGACCTCTTCGCATTCTTCTGTCATAGAATCCATGGAAGGAGTATTGGGTGTGAAGACCTATATTCCAAGAACACAGGAGCTTGATGATTTCAAAATTCGATCGAAGAGGAAATTCCTGCAAGACTATCCAGACCTTGTGGATACAACTTTGAATGTTTTCGGAATATGGGCATATGATGCTACCACTGCATTAGCAATGGCTGTTGAGAAGGTTGGCAGCACCAACTTTGGGTTTCGCATGAGAAATGACTCTAGCAACCTAACTGATCTTGAAAGGTTTGGAATATCTGACAAGGGGGAAGAGCTGCGTGAAGCTTtatcaaatacaaaatttaaaggcCTCAGTGGAGAGTTCAACGTTGTTGATGGGCAATTGCAAGCATCAACCTTTGAGATAATAAATGTGATGGGTAACGGGGAAAGGAGGGTAGGATTTTGGACGTCACAGAATGGACTAGTAAGGAATCTGGGTTCAATAAACAAAAGCACATATTCTGCATCCAAGAACAATTTAGGACCCATCATCTGGCCGGGTGACAGTTCCTCTGTTCCAAAAGGTTGGGAAAATCCCACAAATGCAAACAAGTTCAGAATCGGAGTTCCAGTAAAAGATGGTTATACTGAATTTCTGAAAATAGAACTTGACAGTAGCACTAATACAACACATGTCACAGGATTCTGCATCGCTGTTTTTGAGGCAGTGATCAAAGTATTACCATATGCCTTACCATACGAATTGATCCCCTTTGATGGAACATACAATGAGTTGGTTACCCAAGTCTATTTCGGGAAGTTTGATGCTGTTGTGGGAGACACAACGATTATTGCAAACAGGTCCAATTACGTGGACTACACTCTGCCCTACACAGAATCAGGAGTAACAATGGTTGTTCCAATAAAAGAAGGTGGGTCGAAGAATCCCTGGACATTTTTAAAGCCACTGACATGGGATCTTTGGGCAACAAGCGCTTGTTCGTTCCTGTTCATTGGATTTGTCATATGGGTCCTCGAACACCGcatcaatgaaaaatttaggGGGCCTCCTTCGTACCAGATTGGCACCAGCCTatggttttctttctctgtcatGGTGTTTGCCCATCGGGAGAAGATAGTGAGCAACTTGGGTAGATTTGTGGTCACAGTATGGGTTTTTGTGGTTCTAATTCTGATTCAAAGCTATACTGCGAGCCTGACGTCCCTCTTGACAGTCGAGCAGCTTCGTCCGGCTTTTACAGATGTTAATCAACTGATAAAGAATAGGTTAAATGTTGGTTATCTGAAAGGTTCTTTTGTGTACGGAATGCTGAAGGAAATGGGTTTTCAAGATTTCCAGCTCAAGGTTTACAATTCCACAGAACACTGCGATGAGCTTTTCATGAAAGGAAGTGCAAACGGTGGCATTGTTGCTGCTTTTGATGAAATCCCTTGCGTAAAACTCTTTCTTGCAAAATACTGCTTCAAGTATGCCATGGTTGAACCTAGATTTAAAACCGGGGGCTTTGGCTTTGTCTTCCCGAAAGATTCTCCTCTTGTGGCTGACATTTCAAGGGCAATATTGAATGTGACCCAGGGAGATGAAATGACAAGAATTGAAAGGGCATGGTTCCAGAGGAGCAGTTGCCCAGAGTCTGATGCAGCAATTTCTTCTAGTACTAATAGTCTAGGCCTAGATGGCTTCTGGGGTCTATTTCTAATTGCAGCGGCTGCTTCTCTATTGGCTCTCATATGTTTTGCAGTTAGGTTCCTCTACAAGTATAGACATATATTGTTAAGCTATGATGACAATACCTCAGTATGGAAACGAATCGGTATATTGCTAAGGATCTTTGACGAAAAAGATCTAAGCTCTCACACTTTCAGAAACAGTGAAAGTAGCAGTAGACATATTTTGAGTCCGGTTGAGCTCTCTCCAACTACACATGGTCCACCAAGCCCATTCAGGCGCACGGAAATGTCCTCTCCATACTGCGCTCATATTAGTCCATATGCTCATGCTCATGCTCATGCGCCTCGAGGGACCAATCCAATCAATTTTCACCATTA 2849 0.4293 MMESPRAKLVQPLTLILYWSLCLLVAMAQTRNTTVAVKVGVVLDLDEKIAKMGLSCINMSLTDLYYSHSNYNTRLVFNVRDSRKDVVTAAAQALDLIKEEQVQAIIGPISSMEAGFIIGLGDKAHVPILSFSATSPSLTSLGSPYFFRIAQNDSAQVDAIGAIVQAFGWREAVPIYIDNEFGKGVIPFLTNALQKVYARIPYLSAISPSATDQDIRTELYKLMTMQTRVFVVHMGRDIGPRLFTIAKQIGMMEQGYVWIVSDGIANELTSSHSSVIESMEGVLGVKTYIPRTQELDDFKIRSKRKFLQDYPDLVDTTLNVFGIWAYDATTALAMAVEKVGSTNFGFRMRNDSSNLTDLERFGISDKGEELREALSNTKFKGLSGEFNVVDGQLQASTFEIINVMGNGERRVGFWTSQNGLVRNLGSINKSTYSASKNNLGPIIWPGDSSSVPKGWENPTNANKFRIGVPVKDGYTEFLKIELDSSTNTTHVTGFCIAVFEAVIKVLPYALPYELIPFDGTYNELVTQVYFGKFDAVVGDTTIIANRSNYVDYTLPYTESGVTMVVPIKEGGSKNPWTFLKPLTWDLWATSACSFLFIGFVIWVLEHRINEKFRGPPSYQIGTSLWFSFSVMVFAHREKIVSNLGRFVVTVWVFVVLILIQSYTASLTSLLTVEQLRPAFTDVNQLIKNRLNVGYLKGSFVYGMLKEMGFQDFQLKVYNSTEHCDELFMKGSANGGIVAAFDEIPCVKLFLAKYCFKYAMVEPRFKTGGFGFVFPKDSPLVADISRAILNVTQGDEMTRIERAWFQRSSCPESDAAISSSTNSLGLDGFWGLFLIAAAASLLALICFAVRFLYKYRHILLSYDDNTSVWKRIGILLRIFDEKDLSSHTFRNSESSSRHILSPVELSPTTHGPPSPFRRTEMSSPYCAHISPYAHAHAHAPRGTNPINFHH 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00472 949 CDD GluR_Plant 462 804 - -
Bva10g00472 949 Gene3D - 756 811 - -
Bva10g00472 949 Gene3D - 363 462 - -
Bva10g00472 949 SUPERFAMILY Periplasmic binding protein-like II 442 806 - -
Bva10g00472 949 Gene3D - 577 707 - -
Bva10g00472 949 Pfam Bacterial extracellular solute-binding proteins, family 3 488 805 IPR001638 -
Bva10g00472 949 Gene3D - 159 316 - -
Bva10g00472 949 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 37 897 - -
Bva10g00472 949 Pfam Ligand-gated ion channel 806 838 IPR001320 GO:0015276|GO:0016020
Bva10g00472 949 PANTHER GLUTAMATE RECEPTOR 2.9 37 897 - -
Bva10g00472 949 SMART GluR_14 463 806 IPR001320 GO:0015276|GO:0016020
Bva10g00472 949 Gene3D - 463 576 - -
Bva10g00472 949 Pfam Receptor family ligand binding region 57 404 IPR001828 -
Bva10g00472 949 PIRSF IGluLR_plant 7 911 IPR017103 -
Bva10g00472 949 Gene3D - 65 158 - -
Bva10g00472 949 SUPERFAMILY Periplasmic binding protein-like I 37 446 IPR028082 -
Bva10g00472 949 CDD PBP1_GABAb_receptor_plant 38 424 IPR044440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00472 Bva-Chr10 4727922 4731337 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00472 14 923 Ion Channels AT2G29120 51.466 0.0 916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00472 10 4727922 4731337 Bva10g00472 10 4727922 4731337 ECH