Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00469 ATGGCGTCGAAGCTCTGCGATTCCTGTAAATCTGCCACTGCTGCTCTCTTCTGCCGCGCTGACTCCGCCTTCCTCTGTGTTGGCTGTGACTCCGAAGTCCACGCCGCCAACAAGCTCGCCTCCCGTCACGCGCGTGTATGGGTATGCGAAGTCTGCGAGCAGGCCCCTGCCCACGTCACCTGCAAGGCTGACGCTGCTTCACTCTGCGTGACATGCGACCATGATATCCACTCTGCTAATCCACTCGCTCGCCGTCACGAGCGCGTACCTGTCACCCCCTTCTACGACCCTGTACCCTCCTCCCTCCACTCATCTAACCCTGTCAAATCATCAGCTCCAATTAACTTCCTAGACGACCGTTACTTCTCCGACGCAGATGCAGATGCAGATGACGTCAGCCGGGAAGAGGCAGAAGCTGCTTCATGGTTGCTTCCAAACCCAAAGGCCGTGGATAGCCCGGATCGAAACTCAGGTCAGTATCCGTTCTCTGAAATGGACCCGTATCTTGATCTGGATTACGGGCCTGTGGATCCGAAAGTGGAAGCACAGGAACAGAACAGTTCTGGCACCGACGGAGTAGTACCGGTACAGAGCAAGACTACTTTGGCTCCTTCAGTGAACGAGCACTGCTTTGACATGGATTTCTCTGCCTCGTCCAAGCCTTTCGCCTGCGGTTATAACGCACATGCACAGTGCATGAGCCACAGTCTATCATCGTCGTCTCTGGAGGTTGGGGTTGTACCAGATGGGACCACGATATCGGATATATCTAACGGTTACAGCAAGCCAATTACAATGAGCACGTTGATGGAGTCTGGAAATCAGACGATGCAGGTCTCCGCAGCGGACAGGGAAGCTAGGGTTTTAAGGTAcagagagaagaggaagaaccGAAAGTTCGAGAAGACCATCCGTTACGCGTCTCGAAAAGCTTACGCAGAAACCAGGCCAAGGATCAAAGGTAGGTTCGCGAAACGCTCCGACCTGCAAGTGGAAGTGGACCATTTTGCAGGATACGGCGTCGTACCATCATGTTG 1037 0.5313 MASKLCDSCKSATAALFCRADSAFLCVGCDSEVHAANKLASRHARVWVCEVCEQAPAHVTCKADAASLCVTCDHDIHSANPLARRHERVPVTPFYDPVPSSLHSSNPVKSSAPINFLDDRYFSDADADADDVSREEAEAASWLLPNPKAVDSPDRNSGQYPFSEMDPYLDLDYGPVDPKVEAQEQNSSGTDGVVPVQSKTTLAPSVNEHCFDMDFSASSKPFACGYNAHAQCMSHSLSSSSLEVGVVPDGTTISDISNGYSKPITMSTLMESGNQTMQVSAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSDLQVEVDHFAGYGVVPSC 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00469 345 ProSiteProfiles CCT domain profile. 284 326 IPR010402 GO:0005515
Bva10g00469 345 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 344 - -
Bva10g00469 345 MobiDBLite consensus disorder prediction 143 195 - -
Bva10g00469 345 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 344 IPR045281 GO:0009909
Bva10g00469 345 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Bva10g00469 345 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Bva10g00469 345 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Bva10g00469 345 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Bva10g00469 345 Pfam CCT motif 284 326 IPR010402 GO:0005515
Bva10g00469 345 CDD Bbox1_BBX-like 5 48 - -
Bva10g00469 345 SMART bboxneu5 1 48 IPR000315 GO:0008270
Bva10g00469 345 SMART bboxneu5 49 91 IPR000315 GO:0008270
Bva10g00469 345 MobiDBLite consensus disorder prediction 181 195 - -
Bva10g00469 345 CDD Bbox1_BBX-like 48 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00469 Bva-Chr10 4711561 4713006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00469 1 344 C2C2-CO-like Transcription Factor Family AT5G24930 63.514 4.92e-147 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Bva10g00469 zf-B_box 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00469 - - zju:107419941 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00469 10 4711561 4713006 Bva10g00469 10 4711561 4713006 ECH