Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00465 ATGGCGAACGTGGAAGTGATGAATGAGATTGAGGCAAAGGCGTCTGGGCTCGGAGTCGATCTTTCTATTATCGATCTCGACTCTATTCATCTTCCTCCTGGCGAGGACTTTGGCGTAATaagtgatgatgatgatgtttaCCAGGAGGAAAATCAGGAGTTTGATACTGGATTTGGCAACATTATAGTCGTAGACAATCTCCCTGTTGTCCCtcgggagaagtttgaaaagCTTGAAGGTGTAATACGAAAAATCTATAGCCAGATAGGTACTATAAAAGAGGGCGCTTTGTGGATGCCTGTTGATCCTGCTACTGAGAAGACCTTGGGTTACTGCTTTATTGAATATGATACTCCTCAGGAGGCTGAGCTTGCTAAAGAGAAAACACAAGGATACAAGTTGGATCGTTCACATATCTTTTCTGTGAATATGTTCGATGACTTTGATAGGTTCATGCGAGTTCCAGATGAATGGGCCCCTCCTGAAACTAAGCCATACGCACCGGggGAAAATCTTCAACATTGGCTAACTGATGCAAAAGCCCGAGACCAGTTTGTCATTCGTGCTGGCTCAGATACTGAGGTGTTGTGGAATGATGCGAGGCATTTAAAACCTGATCCTGTTTATAAGCGGACGTTTTGGACTGAAAGTTTTGTGCAATGGTCACCACTGGGCACATACCTGGCAACAATTCATAGGCAAGGAGCAGCAGTTTGGGGAGGTGCATCAACATTCAATCGTCTCATGCGTTATGCTCATCCTCAGGTTAAACTCATTGACTTTTCGCCTGGTGAAAAGTATTTGGTAACCTATAGTAGCCATGAACCAAGTAACCCTCGAGATGCTAACAGGGtcttgataaatatatttgacGTGAGAACTGGAAAAGTGATGAGAGATTTTAAGGGAAGTGCTGATGAATTTGCAATTGGAGGTACTGGTGGTGTCTCAGGGGTATCATGGCCCATTTTCAGatGGGGCGGAGGAAAAGATGACAAGTATTTTGCAAGGCTGggaaaaaatatgatatctgTCTATGAGACAGAAACTTTCTCTCTCGTCGATAAGAAGTCTTTAAAGGTTGAAAGTGTGATGGATTTCAGCTGGTCACCAACTGATCCTATCCTTGCTCTTTTTGTTCCTGAATTGGGTGGTGGGAACCAGCCTGCAAGAGTGAGTCTGGTTCAAATCCCCAGCAAAGAAGAACTCAGGCAAAAGAATCTTTTTAGTGTCAGTGATTGCAAGGTGTACTGGCAAAGCAATGGGGACTACCTTGCTGTTAAGGTTGATCGTTATACAAAAACCAAGAAAAGCACATACACAGGCTTTGAGCTTTTCCGTATAAAGGAGCGAGACATACCCATTGAAGTTTTGGAGCTTGAGAATAAGAATGACAAGATCATTGCTTTTGCTTGGGAGCCAAGAGGCCACAGGTTTGCTGTTATTCACGGTGATACCCCAAGGCCTGATGTTAGTTTTTACTCGATGCGAACTGCTCAGAACACTGGTCGGGTTTCAAAGCTCATTACTCTTAAGGGCAAGCAGGCAAATGCCCTTTTCTGGTCCCCTGGTGGCCGTTTCATAATACTTGCAGGATTAAAGGTTTTAAATGGAcagcttgaattttttaacGTAGATGAGCTTGAAACCATGGCAACAGCTGAACATTTTATGGCCACAGATATTGAATGGGATCCTACTGGAAGGTATGTCGCAACTGCTGTGACCTCAGTTCATGAAATGGAAAATGGTTTCAATATATGGTCTTTTCATGGCAAGCTTCTTTACCGGATTCTGAAGGATCATTTCTTTCAGTTCTCTTGGCGGCCAAGGCCACCGTCTTTCTTGAGCGCcgagaaagaggaagagattGCCAAGAACTTGAAGAAGTATAACAAGAAGTATGAGGCGGAAGACCAAGACGTCTCAATGCTTTTGAGTGAGCAAGACCGTGAGAAGCGAAGGATGCTGAAAGAAGAATGGGACAAATGGGTGAGTGAATGGAAGAGGTTGCATGACGAAGACAAGTTGGCGAGGCAGCAACTTAGGGATGGAGAAGCTAGTGATGAAGAGGAGGAGTACGAGGctaaggaaattgaaattgaagaagTGGTTGATGTCACTGAAGAGGTCCTTCCATTTGATTATGGTCACGAGGGATTGAATGTCTtata 2174 0.4177 MANVEVMNEIEAKASGLGVDLSIIDLDSIHLPPGEDFGVISDDDDVYQEENQEFDTGFGNIIVVDNLPVVPREKFEKLEGVIRKIYSQIGTIKEGALWMPVDPATEKTLGYCFIEYDTPQEAELAKEKTQGYKLDRSHIFSVNMFDDFDRFMRVPDEWAPPETKPYAPGENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRTFWTESFVQWSPLGTYLATIHRQGAAVWGGASTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVLINIFDVRTGKVMRDFKGSADEFAIGGTGGVSGVSWPIFRWGGGKDDKYFARLGKNMISVYETETFSLVDKKSLKVESVMDFSWSPTDPILALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKVYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPRGHRFAVIHGDTPRPDVSFYSMRTAQNTGRVSKLITLKGKQANALFWSPGGRFIILAGLKVLNGQLEFFNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFHGKLLYRILKDHFFQFSWRPRPPSFLSAEKEEEIAKNLKKYNKKYEAEDQDVSMLLSEQDREKRRMLKEEWDKWVSEWKRLHDEDKLARQQLRDGEASDEEEEYEAKEIEIEEVVDVTEEVLPFDYGHEGLNVL 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00465 724 CDD RRM_eIF3B 59 143 IPR034363 -
Bva10g00465 724 PANTHER BNACNNG51870D PROTEIN 8 712 - -
Bva10g00465 724 PIRSF Transl_init_eIF3b 5 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bva10g00465 724 Gene3D - 181 382 IPR015943 GO:0005515
Bva10g00465 724 Gene3D - 416 631 IPR015943 GO:0005515
Bva10g00465 724 Coils Coil 618 641 - -
Bva10g00465 724 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Bva10g00465 724 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 137 IPR000504 GO:0003723
Bva10g00465 724 SUPERFAMILY RNA-binding domain, RBD 57 143 IPR035979 GO:0003676
Bva10g00465 724 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Bva10g00465 724 Gene3D - 55 154 IPR012677 -
Bva10g00465 724 Coils Coil 687 707 - -
Bva10g00465 724 SUPERFAMILY DPP6 N-terminal domain-like 217 605 - -
Bva10g00465 724 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 8 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bva10g00465 724 SMART rrm1_1 61 143 IPR000504 GO:0003723
Bva10g00465 724 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 52 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00465 Bva-Chr10 4689615 4694934 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00465 9 712 Eukaryotic Initiation Factors Gene Family AT5G27640 78.865 0.0 1194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00465 K03253 - zju:107419937 1303.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00465 10 4689615 4694934 Bva10g00465 10 4689615 4694934 ECH