Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00415 ATGGCTTACCACAACCATCAACTCTCTCAAGACCTTCCACTCCACCATTTCTCAGACCACCAACAGCAGCAGAACCAGCCTCTAAGTGACAGCACCTTGCGTACCATATTGCCGGACCAGCTACACTCGTCTCCTGACCCATCCACAAAACCCGGCTCCGATCCCCACCACCACAACCCACTCCAAACCGCACCCAATTGGCTCAACAACGCCCTTCTTCGCACGCAGTACGGCGATGCCACTGATACTAATAACAATAATACCAGCGCTGCCAACAATAACAACGGCACCAATTTCCTCAACCTCCACACTACCGCTTCTGACTCCACCGGAGCTGCTGCTTCCCGGTCCTCCAGCCAATGGCTGTCACGCCCGATCCTCCACCGTAACCGCAGTGAAGTCATCGACGACGTTGCCCCCGGGGACTCCATCATGGCCGGTGCCGCCTTGTCTCATGAATCCGCCGATTTGAAGCCCGCAAGCGACAATCTTAATAACAAGAGCGAGGCGGTGGTGGTCGACAGCGCCGACGGCTTGATGAATTGGCAGAATGCTAAGTGCAAGGCGGAGATTCTAGCTCACCCGCTGTACGACCAGCTGCTGTCGGCCCATGTGGCGTGCTTGCGGATCGCCACGCCGGTTGATCAGTTGCCCAGAATTGACGCTCAGCTCGCGCAGTCCGAGAATGTGGTCGCCAAGTACTCGGCCTTGGGACACGGTGCTCAGAGCATGGTTGGGGACGAGAGGGAACTCGATCATTTCATGTCGCACTACGTTTTGTTGCTCTGTTCCTTTAAAGAACAACTGCAACAGCATGTCCGGGTCCACGCAATGGAAGCAGTAATGGCTTGTTGGGAAATAGAGCAATCTTTGCAAAGCCTAACAGGGGTTTCACCCGGTGAAGGTACAGGAGCAACAATGTCAGATGACGAGGACGACCAAGTAGATAGTGATGCTAATCTATTTGATGGTAGTTTGGATGGTCCAGACAGTATGGGATTTGGCCCTCTGATTCCAACAGAGACCGAGAGGTCCCTCATGGAGCGTGTAAGGCAGGAATTAAAGCATGAACTGAAACAGGgttataaagagaaaattgtggACATAAGAGAAGAGATTTTACGTAAGAGACGAGCAGGGAAACTTCCTGGTGATACCACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAAGATAAGGCAAGGCTGGTACAGGAAACTGGTTTGCAATTAAAGCAGATTAATAATTGGTTCATCAATCAGAGGAAGAGGAACTGGCACAGCAATCCTTCAACTTCCACTGTCTTGAAAAGCAAACGCAAAAGAAGTAATGCAGGTGATGGCAATGCTGATCGTTACATATA 1388 0.5086 MAYHNHQLSQDLPLHHFSDHQQQQNQPLSDSTLRTILPDQLHSSPDPSTKPGSDPHHHNPLQTAPNWLNNALLRTQYGDATDTNNNNTSAANNNNGTNFLNLHTTASDSTGAAASRSSSQWLSRPILHRNRSEVIDDVAPGDSIMAGAALSHESADLKPASDNLNNKSEAVVVDSADGLMNWQNAKCKAEILAHPLYDQLLSAHVACLRIATPVDQLPRIDAQLAQSENVVAKYSALGHGAQSMVGDERELDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGSLDGPDSMGFGPLIPTETERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKR 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00415 450 SUPERFAMILY Homeodomain-like 375 438 IPR009057 -
Bva10g00415 450 Pfam Homeobox KN domain 393 432 IPR008422 GO:0003677|GO:0006355
Bva10g00415 450 ProSiteProfiles ELK domain profile. 353 373 IPR005539 GO:0003677
Bva10g00415 450 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 52 450 - -
Bva10g00415 450 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 52 450 - -
Bva10g00415 450 MobiDBLite consensus disorder prediction 295 314 - -
Bva10g00415 450 Gene3D - 372 444 - -
Bva10g00415 450 Pfam ELK domain 353 374 IPR005539 GO:0003677
Bva10g00415 450 SMART ELK_2 353 374 IPR005539 GO:0003677
Bva10g00415 450 ProSiteProfiles 'Homeobox' domain profile. 373 436 IPR001356 GO:0003677
Bva10g00415 450 MobiDBLite consensus disorder prediction 38 64 - -
Bva10g00415 450 MobiDBLite consensus disorder prediction 78 104 - -
Bva10g00415 450 SMART KNOX1_2 185 229 IPR005540 GO:0003677|GO:0005634
Bva10g00415 450 Pfam KNOX1 domain 188 228 IPR005540 GO:0003677|GO:0005634
Bva10g00415 450 SMART KNOX2_2 240 296 IPR005541 GO:0003677|GO:0005634
Bva10g00415 450 SMART HOX_1 375 440 IPR001356 GO:0003677
Bva10g00415 450 Pfam KNOX2 domain 245 295 IPR005541 GO:0003677|GO:0005634
Bva10g00415 450 CDD homeodomain 376 437 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00415 Bva-Chr10 4420159 4423493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00415 1 450 Homeobox Transcription Factor Family AT5G25220 64.208 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bva10g00415 KNOX2 4.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00415 - - jre:109008224 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00415 10 4420159 4423493 Bva10g00415 10 4420159 4423493 ECH