Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00411 ATGGATGGCTCGTGGCAGATGAAATGTGATTCCACATTTCAGCCATCAGCACCTGCAATGGTCTCCTCGGCATCGCATGAACCCAGGGCTCAGATGGAGATGAACGCTGGGAATTATCTTTATCCACTAGTTGGTCATGGTTTAAGATCAAAGTTTGTTGGAGGGATGCAAGAACCTGTCTACTCCAGTCGTCTTTATTCAAATAACCATGGATCAGGCCATGCTGATACTGGAAATTCATTTCTGGCTCTCCTTTCTGGTCCTCCGTCCTTATTACAATGTGATTTCCAAGAGTTTTCATTTGCAAAGCACTGTAGCACCTCTGATAATCTTCCTGCTGCTAGTAGGAGTTTTGTTGGTGATTCTGTGGGAAGTACGACCTTCCTGGCACCTAGTGGTGGCCTGTTACCAGAAAATTTAAGCAATCACAACCTGCAAACTAGGGGAGATCCTTCTCCTGTCAGTTATTTATTTCATGATATTGAGATCAGTAATACTGCTATCCAGCCCATAGTTCCTGGTAGCAAGAAAGCAAGGGAGCCTATTTCTTCTAGAAGCCAATGCTGTGGTACAAGCCCTATAtccaatttaaatatttgcaGCGCAGAAATTCAAACTATGGCGAAGGTGGAATTAGATGAAAACTCTTCCAAGCAGGCATCTTCTTTTATGAGTGGGTGCCCTCGTGTGTTCTGCATGGGAAAAAgtGGGTTTCTTCTTCTCAGCAATACAGGGCTTCTTGGCATTGTTTGCTCATGCCACTATTTGCACATGTCTGTCCTTAAATTTTGTGAGCATTCAGGAATACATGATGTCAACCCTGGAATTGCTGTTCATATGGAAAGTGGTGAGACCATTGCACAGTGGAGAAAGCTCTACTTCCTAAAGTTTGGGATTAGGTCTCCAGGTGATGAGAGTGAATGGGATTGGCCAGAAGAATTATCAGCAACAGCCAGCTTGATGAAATCCACTCCATCTGCCTCCAATATGTCCAAAAGTGATTTGCCTCATCTTTCCAATCAAAAGAATGCTCATCGAGGCCACAATTTGTTTAGTGGTGCATTGTCTGGAAAACAACAAACAACTGTTCAGGATGGTTGCAACATTGCATTCAAAGGTTTTAGTGTTACTTCAAAAAGCAACTTGCATTACATGGTGGATGAGCATCTAATGGAACCCAATGTAGCTACATATGCAACTGCACCAAGTGTTTTGAGAACTCGAGGTAATGATGGTTGTCAATCCATAGCTTCCATTGATACTCtaaaaaggaatgaaaattCCACCACCATAAGCTCTCCTTTGCAAAATCCGATAAGCCTTATGAAAGATCCTGTATTCAGCATTAATAGTAATGCAAAAGAAGGTCTTGTTGACAGAGATGCAGCTTTCTCAAATATTGAGCTTAGACTTGGTCAACCGCCTCAGACAGGAAATCGAGTTCTACCAGTTCTTGAACCACAACCATTTGATGAGCTTTTCAGTCCACAAAAGTTGGAAATTCTGAAGCAGATGATTCATAATAGTCCCTGCAGTAGGGAAGAGGAATTTCAGAGAAACCTCAGCTTTGCTACTGGTCCATCTGATTCTGTATTGGTAGAAGAACAAGCCCAGCTGAAACTGAGGAAATTTTTGTCAGGCGTTAGTAGTGGTTTAGGTGCTCCAACGGCTAGATTTGAAACTGAAAATATGGCCAAGTGTTTAATGATTTCGCCATTTCCACGTTTCAGTTCTCAACCTGAGGGAGACGCACATTTgagtattaataaaaatttagtgaaTGAGGGTGGTGTTATTATGCCCAAGAAACTGCAATTTGGTTCTAGTACCTTGCAGTTTGATCCTACTAATGTACTCCAGACTAGTAATGATTGCTTAGAACGTCAGTTGAACCCTTATGCACCAggtttcaataaaattttggataaTGAGAAAGGCATGAGCTATGGTAAAGACTCTTGTACCAAAATAGATTCTGGAGTTAGAGTTGGTAAGTTGATGGAACCATGCTCTTTTATGAGCGCTGTTGGTAGAAGCGGTGACGACTGTAACTCAGCTCTAGTCAATGGAAAGAACTGCAAGTCAAATCATGAATTAAGTATGCTGATGGGTGCATCTGTTGGTACAAACTTCTCGTATTGTTCTAAAAGGGTTTCTTCTGTTGGACAAGACAATTGTATGTTGGGTACTCAATTGGCTTCTGGGAGAGCAATGCAACCTGAAGGAATCTTGAAGGCCTTTTCCTTTCCTGTTTCAACCTCTATGTCAAATCAGACTGCTACTGTGTTGCAACAAGAGGGAAATAATGTAGCCAACTCTTTGCTTGATGAAAATATGAGGTTTCTTAAATCTACGCAAATACTAGAGTTATCAAAGCAACAGCATGAATTGTGTTTGCATGGAGTGCATCAAAACCAAGGTAGATCCAAGAATTTTTCAGAAGTTCAGAACTCTACATATGAGGTTTCAATGTCTAAACATGgtTCAAACAGTCTTTTCCGTGACTCAATCTTGGCTTCAATACCTTTACATtcaaaagagaaggaattGCAATGTAAATCGTATGATCATCTTCAGAACAAGGAACCCTCTCTGAGgTTTGGAAGAAACAAAGACAGTACTAGATCAAGTGAATCTGAAAGATGTGTGCAATCATCTGATACGCATTTGATGATCAAATATGATTGTGGAACTCAGATAAACTATTCTGGGAGCAACTTTGTCTTGGGAGTTGACCAAGCCCCTCCTTATACCATTAGACAACATTTTGGCCAAGATCAAAGTGTTTCAAAGGATGGAAATGTCAACTTTCAGCAaggcagaaaattaaatttccaaaatCTGATCAAAGTTGGCTCTCAAGCTTCTCAATGGATAGACGTGCCAAGTAAGGTGAAGAAAGCAGTCTGTCATGAAGGATCTTCAGACCAGTTAGGTAATGTTTTGGATTGGGGAGGGCAAGACAGTGATCAGCTTGGCAATGTTTCTGCtaaaagattcaaaagagTTATTGACACAGAAGACTCTTCAAAAGAGCCAGAAATTTCTGATCTTTCTTCTGGATGCTCTGCACCTGTGATTACTCAGTCTACTCTTGATGTCAATAATACAGATTCATCTATTGTTGATGCTCTAGACAATCATGTAGTTGATGAGGGGTCAGGCATTGATAAAAGCTGGTCATCGGATGCACttgaaagtgaaaaaagtTCTGAGTTGTTTGGCTTTACTAGCAAGAATTACACGAGGAATGGTTATCCGGGAGTCTTAAATGATCGACCATGTTGCAGTCTTCTTGATGAGCTTAAGCTGTTAGATTCCTTAACATGGAAGAAGGGCTGGAATCAAAACAGCAAGGTGCTTTCTGTTAATTGCAAAACTAGTCAATCTGAAAATTCCAAGATGGgcttcaaaggaaaaaagcgAAAGAGAATGGTGTCAAAAACGCTAGATGCATTGTACCCTTCTGTAATTTCATGCACATCACACAATGAGAATGGTGAGAGTGCTGGAGTTGCTGATTTCCCTTCCTGTTTGTCCAAAGAAATGCCCTTATATTCTGCATCTGGTCAGCAAGGATCTATTACAAGGGCTTGCTTTGTTCAACCCACTGCCAAACAAAGATTTTCTGCTGCTCCTTCCAAATTCATCAATTGTAAGAGTCGTCTAAGCAAGTATCATAGTGTCAGAGATGGGCAAGATAGTTATGAATCAGAATTAAATTCTGATGCTGAGTTTTACAAGTTATCTGAAGTTtctgagagaaagaaatttagaGAGGACATCACTTATGTGGAACTTGAAAATGCTAATCTGAAGTCATCCTTTAGCAGGCTGGAGAATGCTCATAGAAACACAAGACCAGTAGTATGTGGAAAATATGGTGAAATATGTAGTGAAAAATTGGCCGAAGAGCAAAAACCAGCAAAAATTGTTTCTCTTAGCAAGGTTCTTAAAGCTTCTGAAAGATGTAAAGCCTTTATAAATTGCAAGCCTACACTTACTtcaaaaaggaaatggaagaaGTTGAACAGTAAGGAAGACCATGGAACTGAAAATGCAGTACTTTCTGGTGATACAAATGTTAACTTGTCCATGGAAGATTTGAAGATCAAGCCAATTACTAATTGCAATGTGAAGATAGACGGCAAAGCTAAGCATGGTGATAATATTGTAGACACAGCTCATGCTTCATTGAAGCTGAAGTGCAAGGAAATTCGGAAGCGCAGCATTTATGAACTCACTGCTAAAGAAActcaagagaagaagattttgGAGTATGCTGAAGATAGGAAGCATGGTTTGTGTAACACAAATAGTAAAAAATTTGTTGAACACATGAGCACCTGCATCCTGGATTCAGATGTTTTTTGCTGTGTTTGTCAAAGCTCAAGCaatgatgaaattaattgTCTGTTGGAGTGTAGCCGGTGTTTAATTAAAGTACACCAGGCTTGCTATGGGATTTCCACATTACCAAAAGGCTGTTGGTGTTGCAGACCATGCCGAACAAATTCCAAAGATATTGCTTGCGTCCTATGTGGTTATGGAGGTGGAGCCATGACTCGAGCACTACGGAGTCAGACAATTGTGAAAAGCCTCCTAAAAGTTTGGGCTACTGAAAAAGAAGGCATGCGTAAACACACAACTCCACATGATGGTTTCCAAAAGGAAATGGATGCATTTCATTCCACAAAATCTGGACTGACACCAGAAAATATTGAGACATCCAGCAGAGATCTGTTGAAAGTTGGGACGTCTACACACCATGTCCAACAGACTCCATCCTCTGTTGGTAATTTTAAAGTGCATAATAGCATTACAGCAGCTGCACTTGATGCAACTATTAAGCAGTGGGTTCACATGGTTTGTGGGCTTTGGACTCCTGCAACAAGATGCCCTAATGTTGACACCATGAGTGCTTTTGATGTATCTGGTGTTTCACGTCCTAGAGCAGATGTGGTCTGTTCTATTTGTAATAGATGGGGTGGCTCTTGCATAGAGTGCAGGGTTTCTAAATGCTTTGTCAAATTTCACCCTTGGTGTGCTCATCAGAAGGGTCTGTTACAAAGTGAGACTGAGGGTGCTAATGGTGAAAAGGTTGGCTTTTATGGAAGGTGTGTTCTTCATGCTATTGACCACAGATTTCTGTCTAAACATGATCCTGTTGGAACAGAGACAGATTTCCtggaagaaaaggaattcACCTGTGCTAGGACAGAGGGTTACAAGGGGCGCAGGCGAGATGGTTTCCAGAATAATCTTTATAATTCGTTGAAAGAAAAGGGCAGATGCCTTGTCCCGCAGGACCAGTTGAATGCTTGGATTTACATTAATGGGCAGAAATTTTGTTCACAGGGACTCCCAAAATTTCCAGCATCTGATATGGAGTATGATTGCCGAAAGGAATATGCTCGGTATAAACAAGCAAAAGGCTGGAAACACCTGGTTGTTTACAAGTCCGGCATACATGCCCTTGGTCTCTACACTTCTCGGTTCATTTCCCGTGGTGAAATGGTTGTCGAGTATGTCGGTGAAATTGTGGGACAGCGTGTGGCTgataaaagagagaatgaaTATCAATCTGGAAGAAAACTACAGTACAAGAGTGCCTGCTACTTCTTCAGAATAGACAAGGAACATATTATTGATGCCACGCGGAAAGGGGGGATTGCCCGTTTTGTCAACCACTCGTGTCAGCCAAATTGTGTGGCAAAAGTGATTACCATCAGGCATGACAAGAAgGTTGTTTTCTTTGCGGAAAGAGACATATTTCCTGGCGAAGAGATAACATATGATTATCACTTCAACCATGAAGATGAAGGAAAGAAGCTACCCTGCTATTGCAATTCAAAAAATTGCAGGCGCTACTTGAATTG 5879 0.3946 MDGSWQMKCDSTFQPSAPAMVSSASHEPRAQMEMNAGNYLYPLVGHGLRSKFVGGMQEPVYSSRLYSNNHGSGHADTGNSFLALLSGPPSLLQCDFQEFSFAKHCSTSDNLPAASRSFVGDSVGSTTFLAPSGGLLPENLSNHNLQTRGDPSPVSYLFHDIEISNTAIQPIVPGSKKAREPISSRSQCCGTSPISNLNICSAEIQTMAKVELDENSSKQASSFMSGCPRVFCMGKSGFLLLSNTGLLGIVCSCHYLHMSVLKFCEHSGIHDVNPGIAVHMESGETIAQWRKLYFLKFGIRSPGDESEWDWPEELSATASLMKSTPSASNMSKSDLPHLSNQKNAHRGHNLFSGALSGKQQTTVQDGCNIAFKGFSVTSKSNLHYMVDEHLMEPNVATYATAPSVLRTRGNDGCQSIASIDTLKRNENSTTISSPLQNPISLMKDPVFSINSNAKEGLVDRDAAFSNIELRLGQPPQTGNRVLPVLEPQPFDELFSPQKLEILKQMIHNSPCSREEEFQRNLSFATGPSDSVLVEEQAQLKLRKFLSGVSSGLGAPTARFETENMAKCLMISPFPRFSSQPEGDAHLSINKNLVNEGGVIMPKKLQFGSSTLQFDPTNVLQTSNDCLERQLNPYAPGFNKILDNEKGMSYGKDSCTKIDSGVRVGKLMEPCSFMSAVGRSGDDCNSALVNGKNCKSNHELSMLMGASVGTNFSYCSKRVSSVGQDNCMLGTQLASGRAMQPEGILKAFSFPVSTSMSNQTATVLQQEGNNVANSLLDENMRFLKSTQILELSKQQHELCLHGVHQNQGRSKNFSEVQNSTYEVSMSKHGSNSLFRDSILASIPLHSKEKELQCKSYDHLQNKEPSLRFGRNKDSTRSSESERCVQSSDTHLMIKYDCGTQINYSGSNFVLGVDQAPPYTIRQHFGQDQSVSKDGNVNFQQGRKLNFQNLIKVGSQASQWIDVPSKVKKAVCHEGSSDQLGNVLDWGGQDSDQLGNVSAKRFKRVIDTEDSSKEPEISDLSSGCSAPVITQSTLDVNNTDSSIVDALDNHVVDEGSGIDKSWSSDALESEKSSELFGFTSKNYTRNGYPGVLNDRPCCSLLDELKLLDSLTWKKGWNQNSKVLSVNCKTSQSENSKMGFKGKKRKRMVSKTLDALYPSVISCTSHNENGESAGVADFPSCLSKEMPLYSASGQQGSITRACFVQPTAKQRFSAAPSKFINCKSRLSKYHSVRDGQDSYESELNSDAEFYKLSEVSERKKFREDITYVELENANLKSSFSRLENAHRNTRPVVCGKYGEICSEKLAEEQKPAKIVSLSKVLKASERCKAFINCKPTLTSKRKWKKLNSKEDHGTENAVLSGDTNVNLSMEDLKIKPITNCNVKIDGKAKHGDNIVDTAHASLKLKCKEIRKRSIYELTAKETQEKKILEYAEDRKHGLCNTNSKKFVEHMSTCILDSDVFCCVCQSSSNDEINCLLECSRCLIKVHQACYGISTLPKGCWCCRPCRTNSKDIACVLCGYGGGAMTRALRSQTIVKSLLKVWATEKEGMRKHTTPHDGFQKEMDAFHSTKSGLTPENIETSSRDLLKVGTSTHHVQQTPSSVGNFKVHNSITAAALDATIKQWVHMVCGLWTPATRCPNVDTMSAFDVSGVSRPRADVVCSICNRWGGSCIECRVSKCFVKFHPWCAHQKGLLQSETEGANGEKVGFYGRCVLHAIDHRFLSKHDPVGTETDFLEEKEFTCARTEGYKGRRRDGFQNNLYNSLKEKGRCLVPQDQLNAWIYINGQKFCSQGLPKFPASDMEYDCRKEYARYKQAKGWKHLVVYKSGIHALGLYTSRFISRGEMVVEYVGEIVGQRVADKRENEYQSGRKLQYKSACYFFRIDKEHIIDATRKGGIARFVNHSCQPNCVAKVITIRHDKKVVFFAERDIFPGEEITYDYHFNHEDEGKKLPCYCNSKNCRRYLN 1959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00411 1959 Pfam PHD-finger 1470 1503 - -
Bva10g00411 1959 CDD SET_SETD1-like 1816 1955 - -
Bva10g00411 1959 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE TRITHORAX 30 1959 - -
Bva10g00411 1959 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 30 1959 - -
Bva10g00411 1959 MobiDBLite consensus disorder prediction 861 878 - -
Bva10g00411 1959 ProSiteProfiles Extended PHD (ePHD) domain profile. 1594 1711 IPR034732 -
Bva10g00411 1959 SUPERFAMILY FYVE/PHD zinc finger 1451 1507 IPR011011 -
Bva10g00411 1959 ProSiteProfiles Zinc finger PHD-type profile. 1455 1505 IPR019787 -
Bva10g00411 1959 Pfam PHD-zinc-finger like domain 1616 1692 - -
Bva10g00411 1959 Gene3D SET domain 1718 1959 IPR046341 -
Bva10g00411 1959 ProSiteProfiles SET domain profile. 1814 1935 IPR001214 GO:0005515
Bva10g00411 1959 MobiDBLite consensus disorder prediction 861 882 - -
Bva10g00411 1959 SMART set_7 1814 1941 IPR001214 GO:0005515
Bva10g00411 1959 ProSiteProfiles Post-SET domain profile. 1943 1959 IPR003616 -
Bva10g00411 1959 Pfam Tify domain binding domain 246 292 IPR032308 -
Bva10g00411 1959 CDD ePHD 1595 1701 - -
Bva10g00411 1959 SMART PostSET_3 1943 1959 IPR003616 -
Bva10g00411 1959 SUPERFAMILY SET domain 1784 1955 IPR046341 -
Bva10g00411 1959 Pfam SET domain 1827 1934 IPR001214 GO:0005515
Bva10g00411 1959 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1592 1711 IPR013083 -
Bva10g00411 1959 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1443 1515 IPR013083 -
Bva10g00411 1959 SMART PHD_3 1655 1711 IPR001965 -
Bva10g00411 1959 SMART PHD_3 1457 1503 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00411 Bva-Chr10 4402589 4414572 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00411 1816 1959 C2H2 Transcription Factor Family AT2G23740 33.129 1.44e-17 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Bva10g00411 SET 1.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00411 - - gmx:100812602 2035.77