Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00336 ATGTCTGGGTCTTCAATGGTAGGGGATGCGAGCACTTGGTCTAGGGCGCTTGTTAAGGTCTCTCCTTATACTTTCGCCGCGATTGGAATCGCGATCTCAATCGGTGTCTCTGTTCTCGGTGCTGCCTGGGGGATTTATATAACTGGAAGTAGTTTGATTGGTGCTGCTATAAAAGCACCTCGCATTACTTCGAAGAATCTTATCAGTGTTATCTTCTGTGAAGCTGTTGCTATTTATGGTGTTATTGTGGCCATTATCCTACAAACAAAGTTAGAGAGCGTTCCATCGTCACAGATTTATGCACCCGAGTCTCTTAGAGCGGGATATGCAATATTTGCCTCTGGAATTATCGTGGGCTTCGCAAATCTTGTTTGTGGGTTGTGTGTAGGAATAATCGGAAGCAGCTGTGCATTGTCTGATGCTCAAAACTCCTCACTTTTTGTGAAGATTCTTGTGATTGAGATATTTGGTAGTGCCCTTGGTCTCTTCGGAGTAATTGTAGGAATTATCATGTCAGCTCAAGCAACATGGCCTTCAGAAGTTTA 545 0.4385 MSGSSMVGDASTWSRALVKVSPYTFAAIGIAISIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPSSQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPSEV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00336 181 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Bva10g00336 181 Pfam ATP synthase subunit C 28 87 IPR002379 GO:0015078|GO:0033177|GO:1902600
Bva10g00336 181 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078|GO:0033177|GO:1902600
Bva10g00336 181 Gene3D - 23 178 IPR035921 -
Bva10g00336 181 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Bva10g00336 181 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Bva10g00336 181 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bva10g00336 181 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bva10g00336 181 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bva10g00336 181 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bva10g00336 181 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 4 179 - -
Bva10g00336 181 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Bva10g00336 181 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00336 Bva-Chr10 4046903 4049185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00336 1 180 Primary Pumps ATPases(2) AT2G25610 88.889 5.53e-108 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00336 K03661 - rcu:8284846 323.168