Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00331 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCACGATTACCTAGTAAAGAGGGATTTGAAGGCTTCTGCTCAAGCTTTTCAAGCAGAAGGAAAAGTGTCCTCGGATCCTGTTGCTATTGATGCCCCAGGAGGTTTTCTTTTCGAGTGGTGGTCAGTTTTCTGGGATATATTCATTGCCAGGACTAATGAGAAGCACTCCGAGGTTGCGGCATCTTATATTGAGACACAATTGATTAAGGCAAGGGagcagcaacagcaacagcagcagcaacaacaacaacagcagcagcaacagcagCCACAGCCCCAGCAGTCACAGCatcaacagcagcagcagcagatgCAGATGCAACAGCTTTTGCTACAGAGGCATGCTCAACAGCAGCAACAGcatcagcagcagcagcagcaacagcaacagcagcaacaacagcaaccacagcagcagcaacagcagCCACCACCGCAACAGCAGCAGCGAAGGGATGGGGCTCATCTCCTAAATGGCACCGCAAATGGGTTAGTGGGAAATGACCCACTCATGCGGCAGAATCCTGGAACTGCAAATGCTTTGGCAACAAAAATGTATGAGGAAAGGCTGAAACTGCCTCTTCAGAGGGATTCTTTGGATGATGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGTCAACTTTTGGATCCAAATCATGCCTCAATATTGAAGTCTGCTGCAGCTTCTGGCCAGCCTTCAGGgCAAGTGCTGCATGGTGCTGCTGGGGGAATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGATCTACTCCGGATATAAAGCCTGAGATCAATCCTGTTTTAAATCCAAGAGCTGCTGGTCCTGAAGGATCTTTGATGGGAATTCCTGGGTCTAATCAAGGTAGCAACAATTTGACTTTAAAAGGGTGGCCACTTACTGGGTTGGATCAACTACGCTCTGGTCTTCTGCAGCAGCAAAAGCCATTTATACAGGCTCCTCAGCCCTTTCATCAACTTCAAATGTTGACACCACAGCATCAGCAACAGCTTTTGCTTGCACAACAGAATTTGGCATCGCCATCGGGCAGTGATGAGAGCAGAAGACTCAGAATGCTATTGAACAGGAATATGGGTCTTAATAAGGATGGTCTTTCAAATCCTGTCAGTGATGTGGTTTCAAATGTAGGATCACCTCTTCAAGCTGGTAGCCCTCTTTTGCAGACTCGTGGAGATACAGATATGCTAATGAAGTTAAGATTGGCTCAGTTACAGCAGCAACATCAACAACAGCAGGGCACCAATCCACAGCAGCAGCAACTTCCGCAGCATGCTCTTTCAAATCAGCAATCTCAGTCTTCAAATCATAACATGCATCAGCAAGATAAAGTGGCTGGTGGTGGCAGTGTCACTGTGGATGGTAGCATGTCAAACTCATTCCGAGGGAATGATCAGGTTTCCAAAAACCAGACcgggagaaagagaaagcagCCTGTATCTTCCTCTGGTCCTGCCAATAGCTCGGGAACAGCAAATACAGCAGGCCCATCTCCCAGTTCAGCACCATCAACTCCTTCCACTCATACACCCGGAGATGTGATGTCAATGCCTGCTTTGCCTCACAGTGGTAGTTCTTCAAAGCCTTTAATGATGTTTGGCACTGATGGCACTGGAACGTTGACATCACCTTCAAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATATGGATGAGGATAATGTTGAGTCTTTTTTATCCCATGATGATGCAGACCCTAGAGATCCCAGTCGTTGTATGGATGTAAGCAAAGGCTTCTCATTTGCTGAAGCAAATTCTGTACGAGCAAGCACAAGTAAAGTCGTATGCTGCCATTTCTCATCTGATGGAAAGTTACTTGCTAGTGGCGGCCATGACAAAAAGGCTGTTTTATGGTACGCTGATTCTCTAAAGCAAAAAACTACTCTTGAAGAGCATTCATCTTTGATTACTGATGTCCGCTTCAGTCCAAGCGTTGCACGTCTCGCAACATCTTCATTTGACAAAACTGTTAGGGTCTGGGATGTTGAAAATCCTGGGTACTCGCTTCGGACCTTTACAGGACATTCGGCATCTGTTATGTCTCTGGATTTTCACCCAAATAAAGATGATCTTATCTGCTCTTGTGATGGGGATGGTGAGATACGATATTGGAGTATAAACAATGGCAGCTGTGCTCGGGTCTCTAAGGGTGGCAATGCCCAGATGAGATTTCAACCCCGTTTGGGGAGATACCTTGCGGCAGCTGCAGAGAATGTCGTCTCTATACTTGATGTGGAGACACAAGCATGCCGGTATTCATTACAGGGGCATACAAAGCCAATACATTCTGTGTGCTGGGACCCTTCTGGAGAGTTCCTGGCATCTGTCAGCGAGGACTCTGTCAGGGTTTGGACTCTTGGAACTGGGAGTGAAGGGGAATGTGTTCATGAGCTAAGCTGTAATGGTAATAAGTTTCACTCGTGTGTTTTCCATCCAACGTACCCTTCATTGCTGGTCATTGGATGTTACCAGTCTTTGGAGCTGTGGAACATGACAGAGAACAAGACAATGACACTGTCTGCCCATGAAGGACTTATTGCTGCATTGGCCGTCTCAACTGCAACTGGTTTGGTTGCTTCGGCCAGTCATGACAAATTTGTCAAGCTCTGGAAGTA 2717 0.4354 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQPQPQQSQHQQQQQQMQMQQLLLQRHAQQQQQHQQQQQQQQQQQQQQPQQQQQQPPPQQQQRRDGAHLLNGTANGLVGNDPLMRQNPGTANALATKMYEERLKLPLQRDSLDDAAMKQRFGENMGQLLDPNHASILKSAAASGQPSGQVLHGAAGGMSPQVQARSQQLPGSTPDIKPEINPVLNPRAAGPEGSLMGIPGSNQGSNNLTLKGWPLTGLDQLRSGLLQQQKPFIQAPQPFHQLQMLTPQHQQQLLLAQQNLASPSGSDESRRLRMLLNRNMGLNKDGLSNPVSDVVSNVGSPLQAGSPLLQTRGDTDMLMKLRLAQLQQQHQQQQGTNPQQQQLPQHALSNQQSQSSNHNMHQQDKVAGGGSVTVDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVMSMPALPHSGSSSKPLMMFGTDGTGTLTSPSNQLADMDEDNVESFLSHDDADPRDPSRCMDVSKGFSFAEANSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWYADSLKQKTTLEEHSSLITDVRFSPSVARLATSSFDKTVRVWDVENPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGNAQMRFQPRLGRYLAAAAENVVSILDVETQACRYSLQGHTKPIHSVCWDPSGEFLASVSEDSVRVWTLGTGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMTENKTMTLSAHEGLIAALAVSTATGLVASASHDKFVKLWK 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00331 896 CDD WD40 612 896 - -
Bva10g00331 896 MobiDBLite consensus disorder prediction 173 192 - -
Bva10g00331 896 Gene3D - 592 745 IPR015943 GO:0005515
Bva10g00331 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 612 653 IPR001680 GO:0005515
Bva10g00331 896 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 654 689 - -
Bva10g00331 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 697 739 IPR001680 GO:0005515
Bva10g00331 896 MobiDBLite consensus disorder prediction 544 572 - -
Bva10g00331 896 MobiDBLite consensus disorder prediction 428 572 - -
Bva10g00331 896 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 697 735 - -
Bva10g00331 896 MobiDBLite consensus disorder prediction 476 536 - -
Bva10g00331 896 SMART WD40_4 772 810 IPR001680 GO:0005515
Bva10g00331 896 SMART WD40_4 816 855 IPR001680 GO:0005515
Bva10g00331 896 SMART WD40_4 605 644 IPR001680 GO:0005515
Bva10g00331 896 SMART WD40_4 647 686 IPR001680 GO:0005515
Bva10g00331 896 SMART WD40_4 857 896 IPR001680 GO:0005515
Bva10g00331 896 SMART WD40_4 690 730 IPR001680 GO:0005515
Bva10g00331 896 ProSitePatterns Trp-Asp (WD) repeats signature. 673 687 IPR019775 -
Bva10g00331 896 Coils Coil 127 151 - -
Bva10g00331 896 MobiDBLite consensus disorder prediction 428 469 - -
Bva10g00331 896 MobiDBLite consensus disorder prediction 97 123 - -
Bva10g00331 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 864 896 IPR001680 GO:0005515
Bva10g00331 896 SMART Lish 8 40 IPR006594 GO:0005515
Bva10g00331 896 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 864 896 - -
Bva10g00331 896 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 896 - -
Bva10g00331 896 MobiDBLite consensus disorder prediction 136 167 - -
Bva10g00331 896 Pfam WD domain, G-beta repeat 693 730 IPR001680 GO:0005515
Bva10g00331 896 Pfam WD domain, G-beta repeat 775 809 IPR001680 GO:0005515
Bva10g00331 896 Pfam WD domain, G-beta repeat 651 686 IPR001680 GO:0005515
Bva10g00331 896 Pfam WD domain, G-beta repeat 859 896 IPR001680 GO:0005515
Bva10g00331 896 Pfam WD domain, G-beta repeat 617 643 IPR001680 GO:0005515
Bva10g00331 896 Pfam LisH 10 36 IPR006594 GO:0005515
Bva10g00331 896 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 896 IPR044716 GO:0003714
Bva10g00331 896 Coils Coil 83 105 - -
Bva10g00331 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 654 689 IPR001680 GO:0005515
Bva10g00331 896 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Bva10g00331 896 Gene3D - 746 896 IPR015943 GO:0005515
Bva10g00331 896 SUPERFAMILY WD40 repeat-like 610 896 IPR036322 GO:0005515
Bva10g00331 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 779 819 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00331 Bva-Chr10 4011296 4018867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00331 630 811 U-box Gene Family AT2G33340 34.031 9.47e-20 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Bva10g00331 WD40 0.094 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00331 - - pvy:116133053 1231.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00331 10 4011296 4018867 Bva06g02435 06 15581741 15589896 BWGD