Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00323 ATGCCTAGTTATATAGAGAGGTTCAATGAGCaagattttcatttaaaacaatCACGTTGCTCTTTTTCAAGGCACCCAAAAATggataaagaaaacaagataTGTGCCAGAGATGAAGAGCATCCAGTCCGAATCACTCGAGCAAGAGCTAGGGCATTGGGATCAATTGGAGGGATACCTCCCACCTCAAGATCATTTAAACCAGAACAGAAGCGTGTCCTTCGAGCAAATTACAAGAAAGGAGTATCTGATGAGAATAAAACGTCTGTGGCTGCCCCCGCTGGTCTTCAGCATAAGAGGAAGGCAGTGCTTACAGATTTAACTAACATCTgtgaaatatcatataataagaTTATTAATAAAGTGTCACAATGTCAGGCAAGAAGAGGTTATGCGAGGAAAAACATGAAGCTAGCTGCAGATGTCTCCAGTGAAGTTCCGTCAACACAGGAGGATGCTAAAACAAAGTTAGCTGAAGAATTGTCGAAAATACGGATGGTAGAATCACATGACACTACCGCTTCAGTAAGGTTGACAGATAAAGAGCCACTACAAAAAAGTACCTCCAGGATAACAGAATGTGTTTTAGCAGATCCCATGCTTTCAGTGCAGGACTCTAGAGAGTCTGATGAACTCCTGAACCCTCCATATAAAGAGGTAGATATGATCTGTGAGAAACTAGGAGCCTCAGATGGTATGGGGATTGTGGACATTGATTCAGAGATAAAGGATCCTCAAGTTTGGAGTTTATATGTCGCTGATATATACAACAATATACGTGTCACAGAGCTCGAAAGGAGACCATCAGCCGATTACATGGACCAGTTGCAGCAAGATGTCACTCCAAGCATGCGGGGAATCCTAATTGATTGGCTTGTGGAGGTTTCTGAAGAATATAAGCTGGTTCCAGACACTCTTTACCTCACAGTAAATCTCATTGATCGGtttctatcaaaaattatGATTCAGAAACAAACGCTCCAGCTGCTTGGTGTTACTTGCATGCTGATTGCATCaaaatatgaagaaatttgTGCTCCTCGAGTGGAAGAATTTTGTTTCATCACAGACAGTACTTACACGAGAGGAGAGGTACTGAAAATGGAAAGTGAAGTTTTAAATCTCCTGAATTTTCAGTTGTCTGTTCCCACCACCAAAACATTTCTCAgGAGATTCATCCAAGCAGCACAAGCTTCGTACAAGGTTCAATTTGTTGAACTGGAATACCTAGCAAATTATTTAGCAGAGCTTACTCTTGTCGAATACAGCTTCCTGAAGTTCCTACCTTCCCTGATTGCTGCATCTGCTGTGTTCCTTGCCAGATGGACGCTCAACCAGTCAGACCACCCATGGAACCCAACTCTGCAGCACTACACAAATTACAAAGTGTCAGAGCTTAAAACTACAGTTCTTGCATTGGAAGATCTGCAGCTTAATACCAAAGGTTGTTCCCTAAATGCCATAcgtgaaaaatataaacaacagAAGTTCAATTGTGTGGCAGCATTGTCTCCAAAATCGGTGTTATCGCTCTTCTA 1538 0.3979 MPSYIERFNEQDFHLKQSRCSFSRHPKMDKENKICARDEEHPVRITRARARALGSIGGIPPTSRSFKPEQKRVLRANYKKGVSDENKTSVAAPAGLQHKRKAVLTDLTNICEISYNKIINKVSQCQARRGYARKNMKLAADVSSEVPSTQEDAKTKLAEELSKIRMVESHDTTASVRLTDKEPLQKSTSRITECVLADPMLSVQDSRESDELLNPPYKEVDMICEKLGASDGMGIVDIDSEIKDPQVWSLYVADIYNNIRVTELERRPSADYMDQLQQDVTPSMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSKIMIQKQTLQLLGVTCMLIASKYEEICAPRVEEFCFITDSTYTRGEVLKMESEVLNLLNFQLSVPTTKTFLRRFIQAAQASYKVQFVELEYLANYLAELTLVEYSFLKFLPSLIAASAVFLARWTLNQSDHPWNPTLQHYTNYKVSELKTTVLALEDLQLNTKGCSLNAIREKYKQQKFNCVAALSPKSVLSLF 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00323 512 CDD CYCLIN 284 373 IPR013763 -
Bva10g00323 512 CDD CYCLIN 381 473 IPR013763 -
Bva10g00323 512 PIRSF Cyclin_A_B_D_E 25 511 IPR039361 -
Bva10g00323 512 SUPERFAMILY Cyclin-like 382 506 IPR036915 -
Bva10g00323 512 ProSitePatterns Cyclins signature. 285 316 IPR006671 -
Bva10g00323 512 PANTHER CYCLIN-A2-4 78 512 - -
Bva10g00323 512 Gene3D - 268 381 - -
Bva10g00323 512 SUPERFAMILY Cyclin-like 243 380 IPR036915 -
Bva10g00323 512 Pfam Cyclin, N-terminal domain 254 381 IPR006671 -
Bva10g00323 512 Pfam Cyclin, C-terminal domain 383 505 IPR004367 -
Bva10g00323 512 SMART Cyclin_C_2 383 506 IPR004367 -
Bva10g00323 512 Gene3D - 254 502 - -
Bva10g00323 512 SMART cyclin_7 387 475 IPR013763 -
Bva10g00323 512 SMART cyclin_7 290 374 IPR013763 -
Bva10g00323 512 PANTHER CYCLINS 78 512 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00323 Bva-Chr10 3973368 3979379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00323 23 512 Core Cell Cycle Gene Families AT5G25380 54.379 4.25e-165 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00323 K06627 - gmx:547780 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00323 10 3973368 3979379 Bva06g02443 06 15612017 15617220 BWGD
Bva10g00323 10 3973368 3979379 Bva10g00323 10 3973368 3979379 ECH