Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00321 ATGGATGTTCTCTCACCAGAACTATATCCTGAAGGTCTAGCTGACACTTACCCGTTATTGATGGAGCAGCCAGGGCACTTGAACGGCAGTCAGCAAACTGAGCACATTATTGACATAACTGGGAGTACTGATGCTTCTACATCTACCTCTCCTCATGATAGACATTTTAATGGCACGGGTACATCTCAGAATGAAAGTGGACCTAATGGTTCAAGATTACCTGTTTCTCAACCTTCAGTTCCCCCTGCTAATGTACCTAATGAATCAATTTCTAGGAATTCTTCATTAGTTAGACGAGGGGATAGGCGACACATGAGTCCATTGAATTCCGGGTTATGGGTATCCGTTGAACTAGTCCTCACAGTGAGCCAGATTGTTGCATCTATTACTGTTTTGTCTTTGTCAAGGCATGAGCATCCACAGACTCCATTGTTTGCATGGATTGTGGGATATGCAATTGGATGTTTTGCCACCCTCCCTCTACTTTATTGGCGTTATTATCATCACCGCCTGATTCGAGAGCAAGATTCATCTCAACGGCATCAAACTTCTCCTCGAATTAATGGTCCTTCAGGGcccttttctctttcccttccTAGAACTAATGAAGGAGAACATAATCAGGCTGTGGCAGCTTCCAGAAGTAATCAAGGTTCATGGTTGATGAATCCCCGATTGAAGACACTAATGGAATACTTCAAAATGGCCTTGGATTGCTTTTTCGCAGTATGGTTTGTTGTTGGCAATGTGTGGATCTTTGGAGGACGCACATCTGCTGATGAGGCTCCCAACTTGTATAGGTTATGTATAGTGTTTCTTACGTTTAGCTGTATTGGTTATGCCATGCCCTTCATTCTATGTGCAACAATATGCTGTTGTCTGCCTTGTATAATCTCCATACTTGGGTTTAGAGAGGATCTGACAAACACCAGAGGGGCAACCTCTGAGTCCATTAATGCTCTGCCAACTTACAagttcaaaatgaagaaacataaaaacagTGATGAAAGTAACTCAACTGTCGGTGAAGGTGGAGTTGTGGCTGCAGGAACTGAAAAGGAGCGTATGATCTCTGGAGAAGATGCAGTTTGCTGCATCTGCCTGGCAaagtatgaaaataatgaCGAGCTGAGAGAGTTGCCATGTTCTCATCTGTTTCACAAAGACTGTGTAGACAAGTGGTTGAAGATAAATGCATTGTGCCCTCTTTGCAAGCATGAAGTTGGTCAGACCGCAACAGGACCAGTCTTCATGGACAGTGGCAGCCAAGAACGGAGCGAGAGCAGGGTTGGAAATGGCATCACTACcgtatttta 1316 0.4217 MDVLSPELYPEGLADTYPLLMEQPGHLNGSQQTEHIIDITGSTDASTSTSPHDRHFNGTGTSQNESGPNGSRLPVSQPSVPPANVPNESISRNSSLVRRGDRRHMSPLNSGLWVSVELVLTVSQIVASITVLSLSRHEHPQTPLFAWIVGYAIGCFATLPLLYWRYYHHRLIREQDSSQRHQTSPRINGPSGPFSLSLPRTNEGEHNQAVAASRSNQGSWLMNPRLKTLMEYFKMALDCFFAVWFVVGNVWIFGGRTSADEAPNLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGFREDLTNTRGATSESINALPTYKFKMKKHKNSDESNSTVGEGGVVAAGTEKERMISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKHEVGQTATGPVFMDSGSQERSESRVGNGITTVF 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00321 438 MobiDBLite consensus disorder prediction 415 438 - -
Bva10g00321 438 SMART ring_2 364 404 IPR001841 -
Bva10g00321 438 Pfam Ring finger domain 364 405 IPR001841 -
Bva10g00321 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 346 413 IPR013083 -
Bva10g00321 438 SUPERFAMILY RING/U-box 356 410 - -
Bva10g00321 438 ProSiteProfiles Zinc finger RING-type profile. 364 405 IPR001841 -
Bva10g00321 438 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 429 - -
Bva10g00321 438 CDD RING-H2_RNF111_like 363 405 - -
Bva10g00321 438 MobiDBLite consensus disorder prediction 42 94 - -
Bva10g00321 438 MobiDBLite consensus disorder prediction 42 99 - -
Bva10g00321 438 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 21 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00321 Bva-Chr10 3962653 3967340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00321 13 414 C3H Transcription Factor Family AT1G80400 53.753 1.04e-147 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00321 - - gmx:100785559 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00321 10 3962653 3967340 Bva10g00321 10 3962653 3967340 ECH