Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00315 ATGTATGTCAAATCGGCGCAATCGTCGTTTCGCGATCGAACACTGGAATTTCAGAACATAGCGGAGAGGCTGAAGAAATCTGTCTCATCAGGATCTGGGCCAAATGGACCAAGTAGTAGTTCGAGATCGGAGGAACAGCGATCTGCTGTTGCAATTCAGTCAGAGTTCAATAGGAGGGCTTCCAAGATTGGATATGGGATACACCAGACGTCGCAGAAGCTTGCCAAGCTAGCCAAGTTGGCAAAAAGGACTTCGGTTTTTGATGACCCCACCATGGAAATCCAAGAGCTTACAGCAGTTATTAAGCAAGATATTACTGCACTGAATTCTGCTGTCGTGGATCTTCAGCTACTCTGCAACTCCAGAAATGAGAGTGGGAATATCTCAAGCGACACAACTAATCATTCAACCACAGTTGTGGATGACCTAAAAAATCGATTAATGAGTGCCACAAAGGAGTTTAAAGAAGTCCTCACCATGCGAACAGAGAATTTGAAAGTCCACGAGAACAGAAGACAGTTGTTTTCGGCCACTGCTTCCAAGGACTCCGCAAATCCTTTTGTTCGTCAACGTCCATTGGCTTCAAGGGCAGCTGCCAGTACTTCTAATGCCCCTGCTCCTCCATGGGCTAGTGGGTCGGCATCATCGTCTCAGTTATTTCCCAAGAAACAGGTAGATGGGGAGAGTCAGCCATTGCTGCAACAGGACCTTcaacaacagcagcaacaATTGGTTCCGATGCAAGACAGTTACATGCAAAGTAGAGCTGAAGCTCTTCAGAATGTTGAGTCTACTATTCATGAACTGAGCAACATCTTTAACCAATTGGCAACACTCGTTTCTCAACAAGGAGAGATTGCTATCAGGATTGATGAGAACATGGATGATACATTGGCAAATGTAGAAGGGGCCCAGGGGGCTTTGTTGAAGTACCTGAACAGCATATCTTCTAATAGGTGGTTGATGATCAAGATATTCtttgtattaatatttttccttatggttttcctattttttgtGGCATA 1025 0.4283 MYVKSAQSSFRDRTLEFQNIAERLKKSVSSGSGPNGPSSSSRSEEQRSAVAIQSEFNRRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLLCNSRNESGNISSDTTNHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHENRRQLFSATASKDSANPFVRQRPLASRAAASTSNAPAPPWASGSASSSQLFPKKQVDGESQPLLQQDLQQQQQQLVPMQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00315 341 PANTHER SYNTAXIN 2 340 IPR045242 -
Bva10g00315 341 SMART tSNARE_6 244 311 IPR000727 -
Bva10g00315 341 Gene3D - 50 304 - -
Bva10g00315 341 MobiDBLite consensus disorder prediction 195 229 - -
Bva10g00315 341 MobiDBLite consensus disorder prediction 192 229 - -
Bva10g00315 341 CDD SNARE_syntaxin5 252 330 - -
Bva10g00315 341 PANTHER SYNTAXIN-32-LIKE 2 340 - -
Bva10g00315 341 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 7 26 IPR021538 -
Bva10g00315 341 ProSitePatterns Syntaxin / epimorphin family signature. 255 294 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bva10g00315 341 MobiDBLite consensus disorder prediction 25 50 - -
Bva10g00315 341 Pfam SNARE domain 285 337 IPR000727 -
Bva10g00315 341 Pfam Syntaxin 227 284 IPR006011 GO:0016020
Bva10g00315 341 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 249 311 IPR000727 -
Bva10g00315 341 SUPERFAMILY t-snare proteins 54 304 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00315 Bva-Chr10 3916499 3920235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00315 1 341 SNARE and Associated Proteins AT3G24350 65.289 1.99e-146 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00315 K08490 - gmx:100811494 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00315 10 3916499 3920235 Bva10g00315 10 3916499 3920235 ECH