Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00308 ATGGGAGAGGTGGCAGTAATGCACTCCGAGTCTCTGCATTTTGAGTGCAAGGATATGAAGCATATGACAGAGACAAATGTGTATTTTCCAGAATCCAGCACAGAGTGTGTGCCTGGAGAAGAACCCAAAGATTACGAAAACATTAGTGACTTACGAGAGAAAGGATATATGCAATATGGATGTTCTCATTACCGAAGGAGATGCCAAATCAGGGCCCCATGTTGCAATGAAATTTTTGATTGCCATCATTGTCACAATGAGGTTAAAAATAACATTAGCATTGACCATAAGCATAGACATGACATTCCCCGCCATCAAGTTAAACAGGTTATATGCTCTCTTTGTGGGACTGAACAAGAGGTCCAGCAAAATTGTACAAACTGTGGTGTTTGTATGGGCAAATACTTTTGTGAGACCTGCAAGCTCTTTGATGATGAAATATCTAAGCGGCAGTACCATTGCAGTGGATGTGGGATTTGCAGAATTGGGGGAGGAGAGAATTTCTTCCATTGCTATAAGTGTGGTTGTTGCTACCCCATTCTGCTGAAAGCCAGTCACCCTTGTGTGGAAGGAGCTATGCATCATGATTGCCCTATTTGTTTTGAGTATTTGTTCGAATCCAGGAATGACGTAACTGTTATGCCCTGTGGGCATACCATCCATAAGAACTGCTTGAAGGAAATGAGAGAACACTTACAGTATGCATGCCCCCTCTGCTCAAAATCAGTTTGTGATATGTCAAGAGTGTGGGAGAAATTTGACATGGAGATTGCCGCCACACCAATGCCGGaaccatataaaaataaaatgGTGACCTGTTGGGTAGATTTTGAGGCCACACAAGTATTTGCTTGTTTACTGATAATGTTTGGATCCTTTGTAATGATTGCGGGAAAACTTCTTACGTTCAGTTCCATATTTTGGCTCAAAAATGTTCGAACTGCAAATCTTACAACACACGAAAAACAAGAGGCTGAGCCAGTGGCAGTGGCGCTATTGTTTCCACAAAGACTGCATTTGGTTCCTTGTGAAGATGGTAGCAAATTCAATTGCGTTCTTCGTCGGGTACGAGGAAGCTCCCCTGGTGGGGGAATCTTGACATCACGCTCAGCTACATCAACAAGGCAGAACACAACCATGGTTCGCATTTGGTATCGGAGAGTAGTTGAGTCATCGAGTGTGATTTGTGTCGGCGTTGGTGGTTTAAGGTTGGGTTA 1217 0.4281 MGEVAVMHSESLHFECKDMKHMTETNVYFPESSTECVPGEEPKDYENISDLREKGYMQYGCSHYRRRCQIRAPCCNEIFDCHHCHNEVKNNISIDHKHRHDIPRHQVKQVICSLCGTEQEVQQNCTNCGVCMGKYFCETCKLFDDEISKRQYHCSGCGICRIGGGENFFHCYKCGCCYPILLKASHPCVEGAMHHDCPICFEYLFESRNDVTVMPCGHTIHKNCLKEMREHLQYACPLCSKSVCDMSRVWEKFDMEIAATPMPEPYKNKMVWILCNDCGKTSYVQFHILAQKCSNCKSYNTRKTRG 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00308 306 SUPERFAMILY CHY zinc finger-like 58 132 IPR037274 GO:0008270
Bva10g00308 306 Pfam Zinc-ribbon 244 302 IPR039512 -
Bva10g00308 306 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 17 306 - -
Bva10g00308 306 Pfam Ring finger domain 196 239 IPR001841 -
Bva10g00308 306 ProSiteProfiles Zinc finger CHY-type profile. 54 130 IPR008913 GO:0008270
Bva10g00308 306 SUPERFAMILY Zinc hairpin stack 133 190 IPR037275 -
Bva10g00308 306 ProSiteProfiles Zinc finger CTCHY-type profile. 132 196 IPR017921 -
Bva10g00308 306 ProSiteProfiles Zinc finger RING-type profile. 197 240 IPR001841 -
Bva10g00308 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 242 IPR013083 -
Bva10g00308 306 SMART ring_2 197 239 IPR001841 -
Bva10g00308 306 Gene3D - 268 306 - -
Bva10g00308 306 SUPERFAMILY RING/U-box 196 245 - -
Bva10g00308 306 Pfam CHY zinc finger 61 142 IPR008913 GO:0008270
Bva10g00308 306 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 17 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00308 Bva-Chr10 3874989 3878305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00308 51 302 C2H2 Transcription Factor Family AT3G18290 40.698 4.00e-55 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00308 K10144 - gmx:100803569 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00308 10 3874989 3878305 Bva06g02454 06 15677636 15683312 BWGD
Bva10g00308 10 3874989 3878305 Bva10g00308 10 3874989 3878305 ECH