Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00286 ATGCCGGGACTAACATGCAACGCTTGCAACAAAGAATTTCTGGACGATGCAGAGCAAAAGCTCCATTATAAGTCCGAGTGGCACCGCTACAATCTTAAGCGCAAgGTGGCCGGAGTTCCCGGGGTGACAGAAGCACTTTTTCTGGCTAGACAATCTGTTCTTGCTCAAGCGAAAGATAAATCTAGTGAAACCCCCATGCTGTATAGTTGTGGCCTCTGTGGAAAAGGGTATAAAAGCTCTAAGGCTCATGCTGAGCATCTTAAATCGCGAGGTCACTTGATGCGGGCTTCTCAAGGAAATAGTCAATCAGATGAGAAGGCAATAATCAAGCCACTTCCACAGCGTTCTGTGAATAGACCTCCTCCAAGAAGAGAGGTGGATAATGCTGAAAGTGAAGATGAATGGGAGGAAGTTGATCCAGAAGAGGATTTGGTTAATGATGCCACAAAATCCTTGACTGATTTGAATGTGGATGAGCATGCCTCCAATATTGATatggatgaagatgatgaCGGTGATGATTATGAGGAGCTGGACCCATCTTGTTGCTTTATGTGTGATCAAGATCATGATACAATAGAAAGCTGCATGGTTCACATGCACAAGCAGCATGGATTCTTCATTCCTGATGTTGAGTATTTGAAGGATCCAAAAGGTCTCCTTACTTATCTTGGTCTTAAGGTCAAGAGGGATTATATGTGTCTGTATTGCAATGATAGACGTCATCCCTTCAGTAGCTTGGAAGCACTTAGGAAGCACATGGCAGCAAAAAGTCACTGTAAAGTGCATTATGGTGATGGTGATGACGAGGAGGAGGCAGAATTGGAAGAATTCTACGACTATAGCAGCAGTTACATCGATGAGCAAGGCAAGCAGCTGATTGCATCAGGTGATATGGCCAACATTGTAGAACTTGGTAGTGGTGGGTCTGAGCTCATCATCACCAAGAAATCTGATGAAGGGATATCAACCAAAACCCTTGGTTCCCGTGAATATTTGCGTTATTATCGTCAGAAACCTCGGCCATCACCATTAAATAATATGGCAATTGCTGCTGCATTGGCTTCAAGGTACAGGAGCATGGGTTTGGCTACGGTCCAATCAAGGGAGCACGTGGTGAGGTTGAAAGTACTGAAGGAAATGAACAGGTCTGGTGTTGAGACTATGCGTACTAAAATAGGGTTGAAGAATAACGTTATCCGGAACCTGCCAAAGAATGTCCCATATTA 1229 0.4361 MPGLTCNACNKEFLDDAEQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQSVLAQAKDKSSETPMLYSCGLCGKGYKSSKAHAEHLKSRGHLMRASQGNSQSDEKAIIKPLPQRSVNRPPPRREVDNAESEDEWEEVDPEEDLVNDATKSLTDLNVDEHASNIDMDEDDDGDDYEELDPSCCFMCDQDHDTIESCMVHMHKQHGFFIPDVEYLKDPKGLLTYLGLKVKRDYMCLYCNDRRHPFSSLEALRKHMAAKSHCKVHYGDGDDEEEAELEEFYDYSSSYIDEQGKQLIASGDMANIVELGSGGSELIITKKSDEGISTKTLGSREYLRYYRQKPRPSPLNNMAIAAALASRYRSMGLATVQSREHVVRLKVLKEMNRSGVETMRTKIGLKNNVIRNLPKNVPY 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00286 409 PANTHER ZINC FINGER PROTEIN-RELATED 1 409 - -
Bva10g00286 409 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Bva10g00286 409 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Bva10g00286 409 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Bva10g00286 409 SMART c2h2final6 68 92 IPR013087 -
Bva10g00286 409 SMART c2h2final6 232 259 IPR013087 -
Bva10g00286 409 SMART c2h2final6 4 28 IPR013087 -
Bva10g00286 409 PANTHER ZINC FINGER PROTEIN 622 1 409 IPR040025 -
Bva10g00286 409 SUPERFAMILY beta-beta-alpha zinc fingers 167 283 IPR036236 -
Bva10g00286 409 MobiDBLite consensus disorder prediction 84 173 - -
Bva10g00286 409 Pfam C2H2 type zinc-finger (2 copies) 183 284 IPR041661 -
Bva10g00286 409 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Bva10g00286 409 SUPERFAMILY beta-beta-alpha zinc fingers 67 99 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00286 Bva-Chr10 3739120 3741426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00286 1 409 C2H2 Transcription Factor Family AT4G31420 66.586 0.0 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva10g00286 zf-C2H2_2 2.8e-26 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00286 K14816 - zju:107420801 663.685