Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00278 ATGGATGAATATTCTGGTAAAAGAGCCAATGATGGGGTGGTAGTCCCCAGAAAGGGGATGGCTCATGTATTTAGAGATACTGCTAAGACTAGGGATCGGAATAGTCAATTGTGCAGCCGATTTGGTTGCAGTAGTAGAGTCAACACTCCCAAAGGTGCTCAAATTAGTTATTCTGAGAAAGGCAAATCTTTGAGGTCTTCAATCAGACCCTCTTCAAATGGCAAGGAAGTAAGTGGAAGTTCCTCTAGAACTGTCTCAAGAACTAATAGTGCAGGAAAATCCCTCACTGAGCCTAAGAAAACGTTATCCTCTCACTTAGAAATAGATTCATCTGAAACAAGCAGTGTACAGGATGAACCACAAGTTACAGAGCTCATCCCTACCTCAGAAAAAATTGAGGGAGCTGAACAGGAAAATACAGAATCTGAATCTGGCAATGTTATGCTGATGGAAGTAGGAAGTTCTAGTGTAGTATCAAATACAAGATCTCGGAGGAACTTCCATCAAAAGCCTGGATTACATGGTCAAGAGGTTAAAAGCACTGGCCCAGTAACGCGTGGTGGTACCAGCAGGTATGGGTTGAGGAACCTCCGATGCAATTCTACATCTGATGTCATCCCAGCTGGGTGTTCATCATCAGATTCAAGCTTCAATAGAAGAAAGGatacaattaaaaagagataCTGTGAAGGAGAAAGTAGTTCTACTGGTAGAGGGAAGAAGATGAGTGGGTCTCCCTTGGAAGGACGGAATTCTGGTTCCAGAAATGGCATATCCATATCTGATTCAAGAAGATCCAGATATATTCCTGCTCACAGGGACAACAACATTGCATCAGTTAGAACTCGTAGATCAGTTAGTGGTCCTTTCGGGGGAAGGCTTTCTAGCCTAGGAAATGAAAGCCCCGTGTCATCGAACGAATCCCCTATCATCATACCTACTTTGTCTCATTCTGGTGAACTTACCACTCCTGGTTTATCACTTCAAACTTCTTCAGAGACTCCTTTAAGTCGACCAAGCTCTTTTAGTAGGCCAGGGAATAGCGTTGAGCAATTATGTGGAGTTATCCCTCCTTCTACTTCAGAATATGGAATCACTCGTTCATTAATAAATCGGGATGGCTTTCGACGCTACAACATGGATGGGATTGCCGAGgTACTATTCGCACTTGAGAGGATTGAACAAGATGATGATCTGACACATGAGCAAATTCTTTTACTGGAGACCAACCTGTTCCTTAATGGACTAAACTTCTATGATCAGCATAGAGACATGCGACTGGATATTGATAACATGTCATACGAGGAGCTATTAGCTCTAGAAGAGAGCATGGGCAGTGTGAGCACGGCCTTAACTGAGGAAGAGCTGTCAGAATGCCTAAAGAGAAGTATTTATCAGTGTGCACTTTCAGAAGATGCAGCTGAGAGTTGCAATGAGGATAAGGATGATACCAAATGCAGCATCTGCCAGGAGGAATATGTGGTAGGAGATGAAGTGGGGAGTTTGCAGTGCGAGCATAAGTATCATGTGGTTTGCATACAGCAGTGGCTCCGATTGAAGAATTGGTGTCCTATATGCAAAGCATCACTAACAGATTCATCGTCACCCTCACCCTCTTG 1619 0.4311 MDEYSGKRANDGVVVPRKGMAHVFRDTAKTRDRNSQLCSRFGCSSRVNTPKGAQISYSEKGKSLRSSIRPSSNGKEVSGSSSRTVSRTNSAGKSLTEPKKTLSSHLEIDSSETSSVQDEPQVTELIPTSEKIEGAEQENTESESGNVMLMEVGSSSVVSNTRSRRNFHQKPGLHGQEVKSTGPVTRGGTSRYGLRNLRCNSTSDVIPAGCSSSDSSFNRRKDTIKKRYCEGESSSTGRGKKMSGSPLEGRNSGSRNGISISDSRRSRYIPAHRDNNIASVRTRRSVSGPFGGRLSSLGNESPVSSNESPIIIPTLSHSGELTTPGLSLQTSSETPLSRPSSFSRPGNSVEQLCGVIPPSTSEYGITRSLINRDGFRRYNMDGIAEVLFALERIEQDDDLTHEQILLLETNLFLNGLNFYDQHRDMRLDIDNMSYEELLALEESMGSVSTALTEEELSECLKRSIYQCALSEDAAESCNEDKDDTKCSICQEEYVVGDEVGSLQCEHKYHVVCIQQWLRLKNWCPICKASLTDSSSPSPS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00278 539 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 530 IPR045191 GO:0061630
Bva10g00278 539 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 470 537 IPR013083 -
Bva10g00278 539 SUPERFAMILY RING/U-box 480 532 - -
Bva10g00278 539 ProSiteProfiles Zinc finger RING-type profile. 486 527 IPR001841 -
Bva10g00278 539 MobiDBLite consensus disorder prediction 236 263 - -
Bva10g00278 539 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 530 - -
Bva10g00278 539 SMART ring_2 486 526 IPR001841 -
Bva10g00278 539 MobiDBLite consensus disorder prediction 228 348 - -
Bva10g00278 539 Pfam Ring finger domain 485 527 IPR001841 -
Bva10g00278 539 MobiDBLite consensus disorder prediction 292 348 - -
Bva10g00278 539 MobiDBLite consensus disorder prediction 41 99 - -
Bva10g00278 539 MobiDBLite consensus disorder prediction 107 124 - -
Bva10g00278 539 MobiDBLite consensus disorder prediction 41 143 - -
Bva10g00278 539 MobiDBLite consensus disorder prediction 166 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00278 Bva-Chr10 3694603 3698902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00278 365 527 C3H Transcription Factor Family AT2G15530 41.718 3.43e-34 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00278 - - gmx:100787213 694.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00278 10 3694603 3698902 Bva06g02486 06 15803746 15807596 BWGD